| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is adhE [H]
Identifier: 119774829
GI number: 119774829
Start: 2070919
End: 2073522
Strand: Reverse
Name: adhE [H]
Synonym: Sama_1693
Alternate gene names: 119774829
Gene position: 2073522-2070919 (Counterclockwise)
Preceding gene: 119774831
Following gene: 119774823
Centisome position: 48.15
GC content: 55.68
Gene sequence:
>2604_bases ATGACAGTCACCAACACTCAGGAACTCAACGAACTGGTCGCGCGCGTCGCCAAGGCACAGGCCCAATTTGCTTCTTACAG CCAAGAGCAAGTGGACAGGATTTTCCGCGCCGCCGCCCTCGCCGCTGCTGATGCACGCATTCGTCTGGCCAAAATGGCCG CTGAAGAAACCCGCATGGGGGTTGTTGAAGATAAGGTCATTAAAAACCATTTCGCCTCCGAGTACATTTACAACAAATAC AAAGACGAAAAGACCTGCGGCATTCTGGCCGAAGACGCCACCTTCGGCACTATCACCATCGCCGAGCCGGTTGGGATCAT CTGCGGCATTGTGCCCACCACCAACCCGACCTCCACCGCTATCTTTAAAGCGCTGATAAGCTTAAAGACCCGCAACGGCA TTATCTTCTCGCCTCACCCAAGGGCCAAGGTTTCAACTACCACTGCCGCCCGCATCGTACTGGATGCAGCCATTGCAGCA GGTGCCCCGAAAGACATTATTGGCTGGATTGATGAGCCTTCGGTGGCGCTGTCCAACCAGTTGATGACCCACGAGAAGAT TAACCTTATTCTCGCCACCGGCGGCCCCGGCATGGTGAAAGCGGCCTACTCCTCCGGCAAACCCGCGATTGGCGTTGGCG CCGGCAACACCCCCATCGTGATTGATGAGACCGCTGACATCAAACGTGCTGTAAGCTCAATTTTGATGTCCAAGACCTTC GATAACGGCGTGGTGTGTGCCTCCGAGCAAGCGGTTGTGGTGGTGGATGCGGTTTACGATGCGGTAAAAGAGCGCTTCTC GAGCCACGGCGGCTATCTGCTCAGCAAGAAAGAAAACGCCGCGCTGCAAAAAGTCATCCTCAAAGACGGTGGCCTCAATG CCGATATCGTGGGTCAAAGCGCCGCCACCATTGCCGCCATGGCCAATATCAAGGTGCCTGCCCACACCAAGGTGCTGATT GGTGAAGTCACCGACATCGATGAGAAAGAGGCCTTCGCCCACGAGAAACTCTCACCGCTGCTTGGCATGTACCGCGCCGC CAACTTTGAAGAGGCGCTGGACAAGGCCGAAGCCCTGGTTGCTCTTGGCGGTATTGGTCACACCTCAGGCCTGTATACCG ATCAGGATACCCAGGACGAGCGGGTCAAATCCTTCGGCTACCGGATGAAGACCGCCCGTATTCTGATTAACACCCCGGCC TCTCAGGGCGGCATAGGCGATTTATACAACTTCAAGCTGGCGCCTTCATTGACTCTGGGCTGCGGCTCCTGGGGCGGTAA CTCGATTTCTGAAAACGTAGGTCCAAGCCATCTTATCAACAAGAAAACCGTCGCCAAGAGGGCCGAAAATATGCTGTGGC ACAAGCTTCCTTCGTCCATCTACTTCCGCCGTGGCAGCCTGCCGATTGCCCTCGAAGAGCTGAGTGGCAAGAAGCGTGCG CTTATCGTGACCGACAAGTTTCTGTTCAACAACGGCTATTGCGATGAAACCATCCGAATTCTGAAGTCACAGGGCCTGGA AACCGAGGTCTTTTACGAAGTGGAAGCCGACCCAACCTTAGCGGTGGTTCGCGCCGGAGCCAAAGTGGCAACCAGCTTCC AACCTGATGTGATAGTGGCTCTGGGTGGTGGTTCGCCCATGGATGCGGCCAAGATCATTTGGGTAATGTACGAGCATCCC GATGTGGACTTTGCCGACCTGGCGCTGCGCTTTATGGATATCCGTAAGCGTATCTACAAGTTCCCCAAACTTGGTGCCAA GGCAATGATGGTGGCCATTCCCACCACCTCAGGTACTGGCTCTGAAGTCACGCCTTTTGCGGTGGTGACCGACGAGCAAA CCGGTGCCAAATACCCCATTGCCGACTATGAACTGACCCCCAACATGGCCATTGTCGACCCCAATCTGGTAATGGATATG CCCAAGTCGCTCACCGCTTTCGGCGGTATCGATGCCATTACCCACGCACTGGAAGCCTATGTCAGCGTGATGGCCAACGA ATACAGCGACGGCCAGGCACTGCAGGCACTGGATTTACTGTTTAAGTATCTGCCAGACAGCTACGCCAGGGGCGCGCAGG CGCCGCTGGCACGGGAAAAAGTGCACAATGGCGCCACCATTGCCGGTATCGCTTTTGCCAACGCCTTCTTAGGCATTTGC CACTCAATGGCTCACAAATTGGGCGCTGAGTTTCACCTGCCCCATGGCCTTGCCAATGCGCTCCTTATCAGCAACGTCAT TCGCTTCAATGCCACTGACCTGCCCACCAAACAGGCGGCGTTCAGCCAGTACGACAGACCCAAGGCCCTGTGCCGTTATG CCGCCATTGCCAGCCACTTAGGCCTTGCCGGCAACAATGATGAAGCCAAGGTAGAGGCGCTTATCGCCAAGATTGAGGAG CTTAAAGCCGCCATCGGTATTCCGGTGTCTATCAAGGACGCAGGGGTAAATGAAGCCGACTTTATGGCCAAGCTTGATGA GTTGGCCGAAGATGCCTTTGACGATCAGTGCACCGGCGCCAACCCGCGCTACCCACTGATTAGCGAGCTGAAACAGCTGC TTATCGATAGCTTCCATGGACGTGCCTATCAGGACAGTCTCTGA
Upstream 100 bases:
>100_bases CACGGTCGCCATACCTATATAGGTGTAATTTTCAGTCACAGGCAAGAATCTTTAGCTAAATTCAGTTTTTGCTAAACATT CTTTTTACGGGAACTTCATT
Downstream 100 bases:
>100_bases TGCATAAAGGGTGACACCGCCCCTTAACACAAAAAAGCCCGGCAACCGCCGGGCTTTTTCATTCGACCATTTCTGGATCA GCAGATAGTCACGAGATCGT
Product: bifunctional acetaldehyde-CoA/alcohol dehydrogenase
Products: NA
Alternate protein names: Alcohol dehydrogenase; ADH; Acetaldehyde dehydrogenase [acetylating]; ACDH; Pyruvate-formate-lyase deactivase; PFL deactivase [H]
Number of amino acids: Translated: 867; Mature: 866
Protein sequence:
>867_residues MTVTNTQELNELVARVAKAQAQFASYSQEQVDRIFRAAALAAADARIRLAKMAAEETRMGVVEDKVIKNHFASEYIYNKY KDEKTCGILAEDATFGTITIAEPVGIICGIVPTTNPTSTAIFKALISLKTRNGIIFSPHPRAKVSTTTAARIVLDAAIAA GAPKDIIGWIDEPSVALSNQLMTHEKINLILATGGPGMVKAAYSSGKPAIGVGAGNTPIVIDETADIKRAVSSILMSKTF DNGVVCASEQAVVVVDAVYDAVKERFSSHGGYLLSKKENAALQKVILKDGGLNADIVGQSAATIAAMANIKVPAHTKVLI GEVTDIDEKEAFAHEKLSPLLGMYRAANFEEALDKAEALVALGGIGHTSGLYTDQDTQDERVKSFGYRMKTARILINTPA SQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPSHLINKKTVAKRAENMLWHKLPSSIYFRRGSLPIALEELSGKKRA LIVTDKFLFNNGYCDETIRILKSQGLETEVFYEVEADPTLAVVRAGAKVATSFQPDVIVALGGGSPMDAAKIIWVMYEHP DVDFADLALRFMDIRKRIYKFPKLGAKAMMVAIPTTSGTGSEVTPFAVVTDEQTGAKYPIADYELTPNMAIVDPNLVMDM PKSLTAFGGIDAITHALEAYVSVMANEYSDGQALQALDLLFKYLPDSYARGAQAPLAREKVHNGATIAGIAFANAFLGIC HSMAHKLGAEFHLPHGLANALLISNVIRFNATDLPTKQAAFSQYDRPKALCRYAAIASHLGLAGNNDEAKVEALIAKIEE LKAAIGIPVSIKDAGVNEADFMAKLDELAEDAFDDQCTGANPRYPLISELKQLLIDSFHGRAYQDSL
Sequences:
>Translated_867_residues MTVTNTQELNELVARVAKAQAQFASYSQEQVDRIFRAAALAAADARIRLAKMAAEETRMGVVEDKVIKNHFASEYIYNKY KDEKTCGILAEDATFGTITIAEPVGIICGIVPTTNPTSTAIFKALISLKTRNGIIFSPHPRAKVSTTTAARIVLDAAIAA GAPKDIIGWIDEPSVALSNQLMTHEKINLILATGGPGMVKAAYSSGKPAIGVGAGNTPIVIDETADIKRAVSSILMSKTF DNGVVCASEQAVVVVDAVYDAVKERFSSHGGYLLSKKENAALQKVILKDGGLNADIVGQSAATIAAMANIKVPAHTKVLI GEVTDIDEKEAFAHEKLSPLLGMYRAANFEEALDKAEALVALGGIGHTSGLYTDQDTQDERVKSFGYRMKTARILINTPA SQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPSHLINKKTVAKRAENMLWHKLPSSIYFRRGSLPIALEELSGKKRA LIVTDKFLFNNGYCDETIRILKSQGLETEVFYEVEADPTLAVVRAGAKVATSFQPDVIVALGGGSPMDAAKIIWVMYEHP DVDFADLALRFMDIRKRIYKFPKLGAKAMMVAIPTTSGTGSEVTPFAVVTDEQTGAKYPIADYELTPNMAIVDPNLVMDM PKSLTAFGGIDAITHALEAYVSVMANEYSDGQALQALDLLFKYLPDSYARGAQAPLAREKVHNGATIAGIAFANAFLGIC HSMAHKLGAEFHLPHGLANALLISNVIRFNATDLPTKQAAFSQYDRPKALCRYAAIASHLGLAGNNDEAKVEALIAKIEE LKAAIGIPVSIKDAGVNEADFMAKLDELAEDAFDDQCTGANPRYPLISELKQLLIDSFHGRAYQDSL >Mature_866_residues TVTNTQELNELVARVAKAQAQFASYSQEQVDRIFRAAALAAADARIRLAKMAAEETRMGVVEDKVIKNHFASEYIYNKYK DEKTCGILAEDATFGTITIAEPVGIICGIVPTTNPTSTAIFKALISLKTRNGIIFSPHPRAKVSTTTAARIVLDAAIAAG APKDIIGWIDEPSVALSNQLMTHEKINLILATGGPGMVKAAYSSGKPAIGVGAGNTPIVIDETADIKRAVSSILMSKTFD NGVVCASEQAVVVVDAVYDAVKERFSSHGGYLLSKKENAALQKVILKDGGLNADIVGQSAATIAAMANIKVPAHTKVLIG EVTDIDEKEAFAHEKLSPLLGMYRAANFEEALDKAEALVALGGIGHTSGLYTDQDTQDERVKSFGYRMKTARILINTPAS QGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPSHLINKKTVAKRAENMLWHKLPSSIYFRRGSLPIALEELSGKKRAL IVTDKFLFNNGYCDETIRILKSQGLETEVFYEVEADPTLAVVRAGAKVATSFQPDVIVALGGGSPMDAAKIIWVMYEHPD VDFADLALRFMDIRKRIYKFPKLGAKAMMVAIPTTSGTGSEVTPFAVVTDEQTGAKYPIADYELTPNMAIVDPNLVMDMP KSLTAFGGIDAITHALEAYVSVMANEYSDGQALQALDLLFKYLPDSYARGAQAPLAREKVHNGATIAGIAFANAFLGICH SMAHKLGAEFHLPHGLANALLISNVIRFNATDLPTKQAAFSQYDRPKALCRYAAIASHLGLAGNNDEAKVEALIAKIEEL KAAIGIPVSIKDAGVNEADFMAKLDELAEDAFDDQCTGANPRYPLISELKQLLIDSFHGRAYQDSL
Specific function: This enzyme has three activities:ADH, ACDH, and PFL- deactivase. In aerobic conditions it acts as a hydrogen peroxide scavenger. The PFL deactivase activity catalyzes the quenching of the pyruvate-formate-lyase catalyst in an iron, NAD, and CoA dependent
COG id: COG1012
COG function: function code C; NAD-dependent aldehyde dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the iron- containing alcohol dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI133922590, Length=315, Percent_Identity=27.9365079365079, Blast_Score=87, Evalue=8e-17, Organism=Escherichia coli, GI1787493, Length=867, Percent_Identity=77.1626297577855, Blast_Score=1360, Evalue=0.0, Organism=Escherichia coli, GI48994951, Length=391, Percent_Identity=36.8286445012788, Blast_Score=204, Evalue=2e-53, Organism=Escherichia coli, GI1789163, Length=402, Percent_Identity=32.8358208955224, Blast_Score=197, Evalue=3e-51, Organism=Escherichia coli, GI87082107, Length=380, Percent_Identity=31.8421052631579, Blast_Score=185, Evalue=1e-47, Organism=Escherichia coli, GI1788797, Length=367, Percent_Identity=32.9700272479564, Blast_Score=171, Evalue=2e-43, Organism=Escherichia coli, GI1789386, Length=388, Percent_Identity=25.2577319587629, Blast_Score=84, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17537053, Length=306, Percent_Identity=28.1045751633987, Blast_Score=110, Evalue=2e-24, Organism=Saccharomyces cerevisiae, GI6321181, Length=391, Percent_Identity=33.7595907928389, Blast_Score=187, Evalue=7e-48, Organism=Drosophila melanogaster, GI24657991, Length=327, Percent_Identity=26.605504587156, Blast_Score=91, Evalue=3e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001670 - InterPro: IPR018211 - InterPro: IPR016161 - InterPro: IPR016163 - InterPro: IPR016162 - InterPro: IPR015590 - InterPro: IPR012079 [H]
Pfam domain/function: PF00171 Aldedh; PF00465 Fe-ADH [H]
EC number: =1.1.1.1; =1.2.1.10 [H]
Molecular weight: Translated: 93035; Mature: 92903
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: PS00913 ADH_IRON_1 ; PS00060 ADH_IRON_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVTNTQELNELVARVAKAQAQFASYSQEQVDRIFRAAALAAADARIRLAKMAAEETRMG CCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC VVEDKVIKNHFASEYIYNKYKDEKTCGILAEDATFGTITIAEPVGIICGIVPTTNPTSTA HHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEECCCCCEEEECCCCCCCHHHH IFKALISLKTRNGIIFSPHPRAKVSTTTAARIVLDAAIAAGAPKDIIGWIDEPSVALSNQ HHHHHHHHHHCCCEEECCCCCCEECHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHH LMTHEKINLILATGGPGMVKAAYSSGKPAIGVGAGNTPIVIDETADIKRAVSSILMSKTF HHCEEEEEEEEEECCCCEEEEECCCCCCEEEECCCCCCEEEECCHHHHHHHHHHHHHHCC DNGVVCASEQAVVVVDAVYDAVKERFSSHGGYLLSKKENAALQKVILKDGGLNADIVGQS CCCEEEECCCCEEEHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCCEEECCC AATIAAMANIKVPAHTKVLIGEVTDIDEKEAFAHEKLSPLLGMYRAANFEEALDKAEALV HHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH ALGGIGHTSGLYTDQDTQDERVKSFGYRMKTARILINTPASQGGIGDLYNFKLAPSLTLG HCCCCCCCCCCCCCCCCHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCEEEECCCEEEE CGSWGGNSISENVGPSHLINKKTVAKRAENMLWHKLPSSIYFRRGSLPIALEELSGKKRA CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCCCCEEHHHCCCCCEE LIVTDKFLFNNGYCDETIRILKSQGLETEVFYEVEADPTLAVVRAGAKVATSFQPDVIVA EEEEEHHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCHHCCCCCCCEEEE LGGGSPMDAAKIIWVMYEHPDVDFADLALRFMDIRKRIYKFPKLGAKAMMVAIPTTSGTG ECCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC SEVTPFAVVTDEQTGAKYPIADYELTPNMAIVDPNLVMDMPKSLTAFGGIDAITHALEAY CCCCCEEEEECCCCCCCCCCCCCEECCCEEEECCHHHHHCCHHHHHHCCHHHHHHHHHHH VSVMANEYSDGQALQALDLLFKYLPDSYARGAQAPLAREKVHNGATIAGIAFANAFLGIC HHHHHCCCCCCHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHCCCCEEHHHHHHHHHHHHH HSMAHKLGAEFHLPHGLANALLISNVIRFNATDLPTKQAAFSQYDRPKALCRYAAIASHL HHHHHHCCCCEECCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHC GLAGNNDEAKVEALIAKIEELKAAIGIPVSIKDAGVNEADFMAKLDELAEDAFDDQCTGA CCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCC NPRYPLISELKQLLIDSFHGRAYQDSL CCCCHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure TVTNTQELNELVARVAKAQAQFASYSQEQVDRIFRAAALAAADARIRLAKMAAEETRMG CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC VVEDKVIKNHFASEYIYNKYKDEKTCGILAEDATFGTITIAEPVGIICGIVPTTNPTSTA HHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEECCCCCEEEECCCCCCCHHHH IFKALISLKTRNGIIFSPHPRAKVSTTTAARIVLDAAIAAGAPKDIIGWIDEPSVALSNQ HHHHHHHHHHCCCEEECCCCCCEECHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHH LMTHEKINLILATGGPGMVKAAYSSGKPAIGVGAGNTPIVIDETADIKRAVSSILMSKTF HHCEEEEEEEEEECCCCEEEEECCCCCCEEEECCCCCCEEEECCHHHHHHHHHHHHHHCC DNGVVCASEQAVVVVDAVYDAVKERFSSHGGYLLSKKENAALQKVILKDGGLNADIVGQS CCCEEEECCCCEEEHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCCEEECCC AATIAAMANIKVPAHTKVLIGEVTDIDEKEAFAHEKLSPLLGMYRAANFEEALDKAEALV HHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH ALGGIGHTSGLYTDQDTQDERVKSFGYRMKTARILINTPASQGGIGDLYNFKLAPSLTLG HCCCCCCCCCCCCCCCCHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCEEEECCCEEEE CGSWGGNSISENVGPSHLINKKTVAKRAENMLWHKLPSSIYFRRGSLPIALEELSGKKRA CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCCCCEEHHHCCCCCEE LIVTDKFLFNNGYCDETIRILKSQGLETEVFYEVEADPTLAVVRAGAKVATSFQPDVIVA EEEEEHHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCHHCCCCCCCEEEE LGGGSPMDAAKIIWVMYEHPDVDFADLALRFMDIRKRIYKFPKLGAKAMMVAIPTTSGTG ECCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC SEVTPFAVVTDEQTGAKYPIADYELTPNMAIVDPNLVMDMPKSLTAFGGIDAITHALEAY CCCCCEEEEECCCCCCCCCCCCCEECCCEEEECCHHHHHCCHHHHHHCCHHHHHHHHHHH VSVMANEYSDGQALQALDLLFKYLPDSYARGAQAPLAREKVHNGATIAGIAFANAFLGIC HHHHHCCCCCCHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHCCCCEEHHHHHHHHHHHHH HSMAHKLGAEFHLPHGLANALLISNVIRFNATDLPTKQAAFSQYDRPKALCRYAAIASHL HHHHHHCCCCEECCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHC GLAGNNDEAKVEALIAKIEELKAAIGIPVSIKDAGVNEADFMAKLDELAEDAFDDQCTGA CCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCC NPRYPLISELKQLLIDSFHGRAYQDSL CCCCHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]