Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119774811

Identifier: 119774811

GI number: 119774811

Start: 2048499

End: 2050307

Strand: Reverse

Name: 119774811

Synonym: Sama_1675

Alternate gene names: NA

Gene position: 2050307-2048499 (Counterclockwise)

Preceding gene: 119774812

Following gene: 119774810

Centisome position: 47.61

GC content: 53.68

Gene sequence:

>1809_bases
ATGAAAACCATTAGTTTTGAATTTGTCACATCCCGGGCCGTGCCCTTTTATCATCAAACTCTGGCTGCACTGGTAAACCA
AGGCGCGCCCAATGTTGAGCTTAGCGCCCGGATCAAGGAGCCAGAGTCGACTGTCGACAAAGCTGAGGCCGACCACTGGT
GCTATCAGTTGTTGGCAAGCGGCCAGCAGTCCCACCTCGAAGCCTTTGCCGACGAACTCGCCACCAAGTTTCCCCTGTCA
TGCTTTTTGTTGGACGCCAGGGTGAAAGCCTTGACACAAGAAGCAATTGAATCACTATCAGAGCCCGATCCATTGGGAAA
TGAAGCGCGTTTTGGCACAGCTGACTATGAATACAGTCTGCCGTTTTGTGGCCACTGTTTTCCAAGACTCGGCGACAACC
AAAGCCCCGAGTTCGGACTGGTTTCCCTGAGCTGTCCCCATTGTCACGGAGAGCAGCAACTGCCAGCGGCGGCGCCAACG
CTGGATGAACTCAAACAGCTTGCAGCCAGCCTGATAGCCGATGGCAGTCTGGCCCTTGACGGCAAAACCTATCAGCTGTC
GGGCTATACCGCTGGCAGCAGTGTGTTATTTACCAATCCCAATACCCTGAGCAGCCACCTGGCGGTTTCCGACGCTGACG
TTCTGGCACTGTCCAGCATCGAAAAACCCCGCCTACGGCTACTGCCCACCAGTGAGCATCCACGCCTTAAAGCACCAAGT
TATAGAGTGCGCTTTGCACAGAGTCGAATCGAACTGGTGCTGTGTGAACTTTTACGGGTAAAAGGCATCGATTGGCTTTA
TGTAAACAAAGACAATCCCACGGATATCTGCGCCGTCGATGGCCGCTGGCAGGTTATTTGTGAACCAGGGCCAAGAAGTC
TCGGTTTATCCGGTATGCCGCTGCAAAATCAAGCCAGTGCAGCTGGCTATCTGGCCCATACCCATAAGGGTACAATTCGC
ATTACTCCCACGGGTTTTGCCAGTGTGAAGTCGCCGGCTCTGCTCGCCTTACGAGGTCAGCTGCAAGCCACTAACAAGAG
CCTCGCCCATCACGCCAGCTTGTATCTGGGGGGAAAAGGTCCGTTGGAGATTGCCACTGTCGACGGTAACGGGAAAGAGG
AAATCTTCTTTACCCAAACGCCGTTGCCAGAAAACGGCTATGAGATTTACCGTCTGCTGATGGAAAGCCCTCAGCGACAG
GTGCTGGAAAAATTCAAGAGCCTCTATCCTCAGGAGTGCCTCTGTATGCTTGACCTTATCCTGTCGCCCACTGCAGAGCG
CGGTAACTTGCAGGGGGTCTGGGCATTGGGTGCCTGCATTCTGGGGCTGGGACTCAATAAAGAAAAACCTTCTGTAGAAT
ACCTTGCCGATGCCCTGGTGGCTGAAGCACAAAAGTTTCGTGGTCAAAGTGCGCCCCGCATCGATTACCCGCTGATCCGG
GGTGAGGCCGTGCGTTCCTTCAACTGGTGTAAAACCCTGGGTACCCTGATGAGCTTCCGTCTTGCCGGCGATACGGATGC
CCCCAAACTTGCGTTTGCCATGATGGACTCCCTTGCCGACTATCTGGCCAATTGGATTGAACATCTGGACTTGAATGTAG
GAGTAAAGCAGGTGTATCTCAGTGGCAGTGAGCTTGCCAATCCTGTGCTCGCCAAACGTGTTTGGTTAAGACTGGGGAAA
AACTTTCCCTTGCTTACCGCACCGGAGCTGGACCTGGATGGCAGTCTTTTTGCCCTTGGCAGCCTGTATACTGAAACTCC
CAGACGTTTTGGCGCCCTTGGACGGGAAACGCATTCGCTTAAAGACTGA

Upstream 100 bases:

>100_bases
ATTAACCACCTGAAGCAATTGGGTTTCCAGTCTGAACGCATCGCCAATAAACCCATTACCAGTTTTTACCAAGACGGGAT
CACCCGCGAGGTATCAGTGG

Downstream 100 bases:

>100_bases
CATCGAAAAATAAGGCAATACGGTAACCCATGAGTGTAAAGATAAGCCTTCACATCACCGGCATAGTTCAGGGGGTTGGG
TTTCGGCCCCATGTATTTCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 602; Mature: 602

Protein sequence:

>602_residues
MKTISFEFVTSRAVPFYHQTLAALVNQGAPNVELSARIKEPESTVDKAEADHWCYQLLASGQQSHLEAFADELATKFPLS
CFLLDARVKALTQEAIESLSEPDPLGNEARFGTADYEYSLPFCGHCFPRLGDNQSPEFGLVSLSCPHCHGEQQLPAAAPT
LDELKQLAASLIADGSLALDGKTYQLSGYTAGSSVLFTNPNTLSSHLAVSDADVLALSSIEKPRLRLLPTSEHPRLKAPS
YRVRFAQSRIELVLCELLRVKGIDWLYVNKDNPTDICAVDGRWQVICEPGPRSLGLSGMPLQNQASAAGYLAHTHKGTIR
ITPTGFASVKSPALLALRGQLQATNKSLAHHASLYLGGKGPLEIATVDGNGKEEIFFTQTPLPENGYEIYRLLMESPQRQ
VLEKFKSLYPQECLCMLDLILSPTAERGNLQGVWALGACILGLGLNKEKPSVEYLADALVAEAQKFRGQSAPRIDYPLIR
GEAVRSFNWCKTLGTLMSFRLAGDTDAPKLAFAMMDSLADYLANWIEHLDLNVGVKQVYLSGSELANPVLAKRVWLRLGK
NFPLLTAPELDLDGSLFALGSLYTETPRRFGALGRETHSLKD

Sequences:

>Translated_602_residues
MKTISFEFVTSRAVPFYHQTLAALVNQGAPNVELSARIKEPESTVDKAEADHWCYQLLASGQQSHLEAFADELATKFPLS
CFLLDARVKALTQEAIESLSEPDPLGNEARFGTADYEYSLPFCGHCFPRLGDNQSPEFGLVSLSCPHCHGEQQLPAAAPT
LDELKQLAASLIADGSLALDGKTYQLSGYTAGSSVLFTNPNTLSSHLAVSDADVLALSSIEKPRLRLLPTSEHPRLKAPS
YRVRFAQSRIELVLCELLRVKGIDWLYVNKDNPTDICAVDGRWQVICEPGPRSLGLSGMPLQNQASAAGYLAHTHKGTIR
ITPTGFASVKSPALLALRGQLQATNKSLAHHASLYLGGKGPLEIATVDGNGKEEIFFTQTPLPENGYEIYRLLMESPQRQ
VLEKFKSLYPQECLCMLDLILSPTAERGNLQGVWALGACILGLGLNKEKPSVEYLADALVAEAQKFRGQSAPRIDYPLIR
GEAVRSFNWCKTLGTLMSFRLAGDTDAPKLAFAMMDSLADYLANWIEHLDLNVGVKQVYLSGSELANPVLAKRVWLRLGK
NFPLLTAPELDLDGSLFALGSLYTETPRRFGALGRETHSLKD
>Mature_602_residues
MKTISFEFVTSRAVPFYHQTLAALVNQGAPNVELSARIKEPESTVDKAEADHWCYQLLASGQQSHLEAFADELATKFPLS
CFLLDARVKALTQEAIESLSEPDPLGNEARFGTADYEYSLPFCGHCFPRLGDNQSPEFGLVSLSCPHCHGEQQLPAAAPT
LDELKQLAASLIADGSLALDGKTYQLSGYTAGSSVLFTNPNTLSSHLAVSDADVLALSSIEKPRLRLLPTSEHPRLKAPS
YRVRFAQSRIELVLCELLRVKGIDWLYVNKDNPTDICAVDGRWQVICEPGPRSLGLSGMPLQNQASAAGYLAHTHKGTIR
ITPTGFASVKSPALLALRGQLQATNKSLAHHASLYLGGKGPLEIATVDGNGKEEIFFTQTPLPENGYEIYRLLMESPQRQ
VLEKFKSLYPQECLCMLDLILSPTAERGNLQGVWALGACILGLGLNKEKPSVEYLADALVAEAQKFRGQSAPRIDYPLIR
GEAVRSFNWCKTLGTLMSFRLAGDTDAPKLAFAMMDSLADYLANWIEHLDLNVGVKQVYLSGSELANPVLAKRVWLRLGK
NFPLLTAPELDLDGSLFALGSLYTETPRRFGALGRETHSLKD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 65845; Mature: 65845

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTISFEFVTSRAVPFYHQTLAALVNQGAPNVELSARIKEPESTVDKAEADHWCYQLLAS
CCEEEEEEHHCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHC
GQQSHLEAFADELATKFPLSCFLLDARVKALTQEAIESLSEPDPLGNEARFGTADYEYSL
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECC
PFCGHCFPRLGDNQSPEFGLVSLSCPHCHGEQQLPAAAPTLDELKQLAASLIADGSLALD
CHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEC
GKTYQLSGYTAGSSVLFTNPNTLSSHLAVSDADVLALSSIEKPRLRLLPTSEHPRLKAPS
CEEEEEECCCCCCEEEEECCCCCHHHEEECCCCCHHHHCCCCCCEEEECCCCCCCCCCCC
YRVRFAQSRIELVLCELLRVKGIDWLYVNKDNPTDICAVDGRWQVICEPGPRSLGLSGMP
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEECCCEEEEECCCCCCCCCCCCC
LQNQASAAGYLAHTHKGTIRITPTGFASVKSPALLALRGQLQATNKSLAHHASLYLGGKG
CCCCCCCCCEEEEECCCEEEECCCCCCCCCCCEEEEEECHHHHHHHHHHHHEEEEECCCC
PLEIATVDGNGKEEIFFTQTPLPENGYEIYRLLMESPQRQVLEKFKSLYPQECLCMLDLI
CEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHH
LSPTAERGNLQGVWALGACILGLGLNKEKPSVEYLADALVAEAQKFRGQSAPRIDYPLIR
HCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
GEAVRSFNWCKTLGTLMSFRLAGDTDAPKLAFAMMDSLADYLANWIEHLDLNVGVKQVYL
CHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
SGSELANPVLAKRVWLRLGKNFPLLTAPELDLDGSLFALGSLYTETPRRFGALGRETHSL
CCHHHCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHCCHHHHHCCCCCCCC
KD
CC
>Mature Secondary Structure
MKTISFEFVTSRAVPFYHQTLAALVNQGAPNVELSARIKEPESTVDKAEADHWCYQLLAS
CCEEEEEEHHCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHC
GQQSHLEAFADELATKFPLSCFLLDARVKALTQEAIESLSEPDPLGNEARFGTADYEYSL
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECC
PFCGHCFPRLGDNQSPEFGLVSLSCPHCHGEQQLPAAAPTLDELKQLAASLIADGSLALD
CHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEC
GKTYQLSGYTAGSSVLFTNPNTLSSHLAVSDADVLALSSIEKPRLRLLPTSEHPRLKAPS
CEEEEEECCCCCCEEEEECCCCCHHHEEECCCCCHHHHCCCCCCEEEECCCCCCCCCCCC
YRVRFAQSRIELVLCELLRVKGIDWLYVNKDNPTDICAVDGRWQVICEPGPRSLGLSGMP
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEECCCEEEEECCCCCCCCCCCCC
LQNQASAAGYLAHTHKGTIRITPTGFASVKSPALLALRGQLQATNKSLAHHASLYLGGKG
CCCCCCCCCEEEEECCCEEEECCCCCCCCCCCEEEEEECHHHHHHHHHHHHEEEEECCCC
PLEIATVDGNGKEEIFFTQTPLPENGYEIYRLLMESPQRQVLEKFKSLYPQECLCMLDLI
CEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHH
LSPTAERGNLQGVWALGACILGLGLNKEKPSVEYLADALVAEAQKFRGQSAPRIDYPLIR
HCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
GEAVRSFNWCKTLGTLMSFRLAGDTDAPKLAFAMMDSLADYLANWIEHLDLNVGVKQVYL
CHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
SGSELANPVLAKRVWLRLGKNFPLLTAPELDLDGSLFALGSLYTETPRRFGALGRETHSL
CCHHHCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHCCHHHHHCCCCCCCC
KD
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA