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The map label for this gene is rsmB [H]

Identifier: 119774800

GI number: 119774800

Start: 2037123

End: 2038373

Strand: Direct

Name: rsmB [H]

Synonym: Sama_1664

Alternate gene names: 119774800

Gene position: 2037123-2038373 (Clockwise)

Preceding gene: 119774799

Following gene: 119774802

Centisome position: 47.31

GC content: 57.63

Gene sequence:

>1251_bases
ATGATCCCGCAGTTTTTTCAATGCCGGATAGCCACCATGCTCGCATCGCCTTTGTCACCGTCTTCTGCCGAATTGGTTCT
TGGGATCCTCAATCAGGTTCTTATGGAAGGCTCGCCCCTGGACAGGGCCTACTCACGTCATTTTTCGGGTCTGAAACTCG
AAAGTGAAGAGCAGGCCAGAATCGCGACGGTGACCGGTGAGCTTATCCGGCGTTTGAATCTTTTCTGTTTCCTTGCTGAC
ACCACCCCGGAGCGCATCGAGCGCGAAGGGAGCCGGGTACTGAATGCCTGGCACAGATTCCATGGTTTGCCCATTCCGCG
TCTCAGATACACCCTGGATATTGAAGAGGCGGTCTTTGCTGAGCGCCTCGAGCGGGCCAAGGCAGAGCCACTGTTGTGGG
ACGGTTGCCCCGACTGGCTGGATAAACTCGGACAGGCAGAGCTGGGTGATACCTGGGCGGCAGAGCGAGCAGCTCTTTCT
TTGGCCCCCAAGCGCTACTTGCGCACCAATGGCCTTAAGTGTACGCGCGATGAACTGGCAACGCGCCTGGCCGCCGAAGG
GGTGCAGACGGTCCCCGTTGACGGTGTAGAGTCTGCACTGGAGGTGACGTCCAACGCCGCGCTCTTTCGTACCAAGGCCT
TTGCCGATGGCTGGTTTGAGCAGCAGGATGCAGGATCACAGCTGGTTGCCGCAGCGCTGGATGTGAAACCCGGGATGCGG
GTGATTGATGCCTGTGCCGGCGCCGGTGGTAAAACACTGCATCTGGCCGCTGCCATGACAGGTAAGGGCAGGCTGCTTGC
CATGGACGTTGAGCAGTGGAAGCTGGATAACCTCAAAGAGCGGGCCCGCCGCGCAGGCGCGCACAATGTCGAGACCCGTC
TGATTGCAGGCAGCAAAACCATCAAACGTTTGAAGCTGTCTGCTGACAGACTGCTGCTGGACGTGCCCTGCTCCGGTCTT
GGGGTGCTCAAGCGTAATCCCGATGCCAAGTGGCGTGATACCGAAGAGCGTTTGCCGGTGCTGATGGAGCTGCAGGCCCA
TATTCTTGGCAGTTACAGCCGCATGGTGAAGGTGGGAGGCATTTTGGTGTATGCAACCTGCTCGATAATGCCCTGTGAAA
ACCGCGGTCAGGTTGATGCATTTTTGGCGGCCAACCCCAACTTCCGCTTGCTGGAAGATGAGAATATTACCCCGGCCACG
TCAGGATTCGATGGTTTCTATCTGGCCAAATTGGAACGCATCGCCGAATAA

Upstream 100 bases:

>100_bases
ATCCCCAATAGGCTATCGATAAGACAGCCATCCTGACAATCGGCTATCTTATTCCACCATTGCCCGGCGTTCTTCCTTGC
GAAGGGGCGCAATACCTCCT

Downstream 100 bases:

>100_bases
ACGGCACTGAGCGGCGTATGCGCATTCTGCCTGTGTCCACCGTGACACCAAGGAGGGCAGAATGCCTACGCAGATGTTAC
TGACGCCTGTGTTGGTTGCG

Product: tRNA and rRNA cytosine-C5-methylase

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MIPQFFQCRIATMLASPLSPSSAELVLGILNQVLMEGSPLDRAYSRHFSGLKLESEEQARIATVTGELIRRLNLFCFLAD
TTPERIEREGSRVLNAWHRFHGLPIPRLRYTLDIEEAVFAERLERAKAEPLLWDGCPDWLDKLGQAELGDTWAAERAALS
LAPKRYLRTNGLKCTRDELATRLAAEGVQTVPVDGVESALEVTSNAALFRTKAFADGWFEQQDAGSQLVAAALDVKPGMR
VIDACAGAGGKTLHLAAAMTGKGRLLAMDVEQWKLDNLKERARRAGAHNVETRLIAGSKTIKRLKLSADRLLLDVPCSGL
GVLKRNPDAKWRDTEERLPVLMELQAHILGSYSRMVKVGGILVYATCSIMPCENRGQVDAFLAANPNFRLLEDENITPAT
SGFDGFYLAKLERIAE

Sequences:

>Translated_416_residues
MIPQFFQCRIATMLASPLSPSSAELVLGILNQVLMEGSPLDRAYSRHFSGLKLESEEQARIATVTGELIRRLNLFCFLAD
TTPERIEREGSRVLNAWHRFHGLPIPRLRYTLDIEEAVFAERLERAKAEPLLWDGCPDWLDKLGQAELGDTWAAERAALS
LAPKRYLRTNGLKCTRDELATRLAAEGVQTVPVDGVESALEVTSNAALFRTKAFADGWFEQQDAGSQLVAAALDVKPGMR
VIDACAGAGGKTLHLAAAMTGKGRLLAMDVEQWKLDNLKERARRAGAHNVETRLIAGSKTIKRLKLSADRLLLDVPCSGL
GVLKRNPDAKWRDTEERLPVLMELQAHILGSYSRMVKVGGILVYATCSIMPCENRGQVDAFLAANPNFRLLEDENITPAT
SGFDGFYLAKLERIAE
>Mature_416_residues
MIPQFFQCRIATMLASPLSPSSAELVLGILNQVLMEGSPLDRAYSRHFSGLKLESEEQARIATVTGELIRRLNLFCFLAD
TTPERIEREGSRVLNAWHRFHGLPIPRLRYTLDIEEAVFAERLERAKAEPLLWDGCPDWLDKLGQAELGDTWAAERAALS
LAPKRYLRTNGLKCTRDELATRLAAEGVQTVPVDGVESALEVTSNAALFRTKAFADGWFEQQDAGSQLVAAALDVKPGMR
VIDACAGAGGKTLHLAAAMTGKGRLLAMDVEQWKLDNLKERARRAGAHNVETRLIAGSKTIKRLKLSADRLLLDVPCSGL
GVLKRNPDAKWRDTEERLPVLMELQAHILGSYSRMVKVGGILVYATCSIMPCENRGQVDAFLAANPNFRLLEDENITPAT
SGFDGFYLAKLERIAE

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=279, Percent_Identity=31.1827956989247, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI76150623, Length=279, Percent_Identity=31.1827956989247, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI32698918, Length=185, Percent_Identity=31.8918918918919, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI23199998, Length=295, Percent_Identity=27.7966101694915, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI270288818, Length=295, Percent_Identity=27.4576271186441, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI8922322, Length=295, Percent_Identity=27.4576271186441, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI270288816, Length=295, Percent_Identity=27.7966101694915, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI39995082, Length=190, Percent_Identity=27.3684210526316, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI301336155, Length=190, Percent_Identity=27.3684210526316, Blast_Score=70, Evalue=4e-12,
Organism=Escherichia coli, GI2367212, Length=287, Percent_Identity=32.7526132404181, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI87081985, Length=276, Percent_Identity=27.1739130434783, Blast_Score=87, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17536757, Length=278, Percent_Identity=29.4964028776978, Blast_Score=98, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI71998419, Length=246, Percent_Identity=31.3008130081301, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI115534021, Length=217, Percent_Identity=31.7972350230415, Blast_Score=74, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6324268, Length=278, Percent_Identity=29.4964028776978, Blast_Score=105, Evalue=1e-23,
Organism=Saccharomyces cerevisiae, GI6319447, Length=198, Percent_Identity=30.3030303030303, Blast_Score=77, Evalue=4e-15,
Organism=Drosophila melanogaster, GI22024126, Length=279, Percent_Identity=29.7491039426523, Blast_Score=99, Evalue=8e-21,
Organism=Drosophila melanogaster, GI21355201, Length=181, Percent_Identity=34.8066298342541, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI19920494, Length=170, Percent_Identity=35.8823529411765, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI21356579, Length=219, Percent_Identity=26.9406392694064, Blast_Score=68, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 45925; Mature: 45925

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPQFFQCRIATMLASPLSPSSAELVLGILNQVLMEGSPLDRAYSRHFSGLKLESEEQAR
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCHH
IATVTGELIRRLNLFCFLADTTPERIEREGSRVLNAWHRFHGLPIPRLRYTLDIEEAVFA
HHHHHHHHHHHHCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHH
ERLERAKAEPLLWDGCPDWLDKLGQAELGDTWAAERAALSLAPKRYLRTNGLKCTRDELA
HHHHHHCCCCCEECCCHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCEECHHHHH
TRLAAEGVQTVPVDGVESALEVTSNAALFRTKAFADGWFEQQDAGSQLVAAALDVKPGMR
HHHHHCCCCCCCCCHHHHHHHHHCCCHHEEHHHHHCCCCCCCCCCHHHHHHHHCCCCCHH
VIDACAGAGGKTLHLAAAMTGKGRLLAMDVEQWKLDNLKERARRAGAHNVETRLIAGSKT
HHHHHCCCCCCEEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCEEEEECHHH
IKRLKLSADRLLLDVPCSGLGVLKRNPDAKWRDTEERLPVLMELQAHILGSYSRMVKVGG
HHHHHHCCCEEEEECCCCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCC
ILVYATCSIMPCENRGQVDAFLAANPNFRLLEDENITPATSGFDGFYLAKLERIAE
EEEEEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MIPQFFQCRIATMLASPLSPSSAELVLGILNQVLMEGSPLDRAYSRHFSGLKLESEEQAR
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCHH
IATVTGELIRRLNLFCFLADTTPERIEREGSRVLNAWHRFHGLPIPRLRYTLDIEEAVFA
HHHHHHHHHHHHCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHH
ERLERAKAEPLLWDGCPDWLDKLGQAELGDTWAAERAALSLAPKRYLRTNGLKCTRDELA
HHHHHHCCCCCEECCCHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCEECHHHHH
TRLAAEGVQTVPVDGVESALEVTSNAALFRTKAFADGWFEQQDAGSQLVAAALDVKPGMR
HHHHHCCCCCCCCCHHHHHHHHHCCCHHEEHHHHHCCCCCCCCCCHHHHHHHHCCCCCHH
VIDACAGAGGKTLHLAAAMTGKGRLLAMDVEQWKLDNLKERARRAGAHNVETRLIAGSKT
HHHHHCCCCCCEEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCEEEEECHHH
IKRLKLSADRLLLDVPCSGLGVLKRNPDAKWRDTEERLPVLMELQAHILGSYSRMVKVGG
HHHHHHCCCEEEEECCCCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCC
ILVYATCSIMPCENRGQVDAFLAANPNFRLLEDENITPATSGFDGFYLAKLERIAE
EEEEEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]