| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774793
Identifier: 119774793
GI number: 119774793
Start: 2023478
End: 2025034
Strand: Reverse
Name: 119774793
Synonym: Sama_1657
Alternate gene names: NA
Gene position: 2025034-2023478 (Counterclockwise)
Preceding gene: 119774795
Following gene: 119774792
Centisome position: 47.03
GC content: 55.3
Gene sequence:
>1557_bases ATGACTTCCCACACATCCCCACTCAAAGATAAGCCGCCACTGTCATTCTGGCAGATTTTCAACATGTGTTTCGGCTTCCT CGGTATCCAGTTTGGCTTTGCACTGCAAAATGCCAACGTCAGCCGTATTTTTCAGACCCTGGGCGCCAGCATCGATGATA TCCCCATCCTGTGGATAGCGGGCCCCCTCACCGGTCTCCTGGTACAGCCCATCGTGGGCTATCTGTCCGACAACACCTGG AATCGTTTTGGCCGTCGTCGCCCCTACTTTCTGATTGGCGCTGTGCTGACCACACTGGCGCTGTTTATCATGCCCCACTC GCCCTATCTGTGGGTGGCAGCGGGTATGCTGTGGATAATGGATGCCTCTATCAATATCGCCATGGAGCCATTTCGCGCCT TCGTAGGCGATAAATTGCCGGAGTCACAGCGGGCAAAAGGTTTTGCCATGCAGAGCTTTTTTATCGGCATAGGCGCCGTG GTGGCCTCCGCGCTGCCTTATCTGCTGTCTAATTTTGCCGGTGTCTCCAATATCGCGCCTGAAGGACAAATTGCCGACAC CGTGCGTTACTCCTTTTATCTTGGCGGTGTTGTGCTGCTTGCAGCCGTTGGCTGGACCATTATCAGCAGCCGCGAATACA GCCCGGAAGAACTCAGCCGCTTTAAGGGGCACGAGCAATCCGGGTTTGAACGCCACCATGGTCGTACGCCAGAGGCTTAC CGCAAAGGCGCTCTGGTATGGAGCACTCTGGGCCTTGCCATCACAGCAGCAACCTTTGCCGCCGATCTGGATAAACAACT GTATCTGCTTGGTCTTGGTGTATTCGCCTTTGGCCCGCTGCAATGGTACTGCGCCCAGCGTTTAAGCGCGGCGGGCAAGC GCAGCGGCAAGCTTGGAATGGTATTTGAAGTGGTAGACGACCTCTTCCACATGCCCCATGCCATGAAGCGTCTGGCGCTG GTGCAGTTTTTCTCCTGGTTTGCGCTCTTTGCCATGTGGATTTACACCACGGCGGCGGTGACCTCGTATCACTATCACAG CAGTGATGTGCTCTCCAAAGCCTACAATGACGGCGCCGACTGGGTTGGTGTGCTCTTTGCCTCATACAACGGCTTTGCGG CACTGGCTGCCATGGTGATCCCGCTGCAGTGTATGCTACTGGGCCTTAAGGGCGCTCACATCATGAATTTGTGCCTTGGC GGGATTGGGCTGATGAGCTTTTACCTGATTGCCGATCCTGCTCTGCTGTGGATACCCATGATAGGGGTTGGTTTTGCATG GGCCTCTATCCTGTCTGTGCCCTATGCCATACTCTCCACCAGCCTGCCGGGCAACAAGCTCGGTGTATACATGGGGATCT TCAACTTTTTCATTGTGATCCCCCAGCTGGTGGCCGCCACAGTGCTTGGTTTTATTCTCAAGAGCCTGTTTGGCAATGAA CCCATATACGCTTTGATCCTCGGTGGCAGCGCCATGATATTGGCCGCCCTGTCAGTACTATTCGTCCCTGCCAGAGAGCA GGAACCCGGGCGCAGCAATGCCGCTGCCCAGGTCTAA
Upstream 100 bases:
>100_bases CGAGCGTCTGAGGGAGGCTCTCGCCGCTGATTTTTTGTATCCGATAATAAAAGGGCTGCCGCGAGTTCATTGCGGTCAAA GCACCCACGACAGGACACCT
Downstream 100 bases:
>100_bases TTATCAGGGAGACGCTTTCGTGCCAGTGACCCATTCTTCTTCGCTTCGTGCCCTCAGCCTTGCCATAGCAGCCGCGCTTG GTGTGTCTGCCTGCCAAAAG
Product: major facilitator transporter
Products: NA
Alternate protein names: Sugar Transporter; Transporter Facilitator Family; Facilitator Superfamily Permease; Facilitator Superfamily Protein; SugarCation Symporter; Facilitator Superfamily Transporter Permease; Cytoplasmic Membrane Maltose Transporter MalY; Transport Protein Facilitator Superfamily Protein; MFS Superfamily Sugcific Permease; Facilitator Superfamily Transmembrane Protein; Facilitator Family Transporter; Sucrose Transporter Protein
Number of amino acids: Translated: 518; Mature: 517
Protein sequence:
>518_residues MTSHTSPLKDKPPLSFWQIFNMCFGFLGIQFGFALQNANVSRIFQTLGASIDDIPILWIAGPLTGLLVQPIVGYLSDNTW NRFGRRRPYFLIGAVLTTLALFIMPHSPYLWVAAGMLWIMDASINIAMEPFRAFVGDKLPESQRAKGFAMQSFFIGIGAV VASALPYLLSNFAGVSNIAPEGQIADTVRYSFYLGGVVLLAAVGWTIISSREYSPEELSRFKGHEQSGFERHHGRTPEAY RKGALVWSTLGLAITAATFAADLDKQLYLLGLGVFAFGPLQWYCAQRLSAAGKRSGKLGMVFEVVDDLFHMPHAMKRLAL VQFFSWFALFAMWIYTTAAVTSYHYHSSDVLSKAYNDGADWVGVLFASYNGFAALAAMVIPLQCMLLGLKGAHIMNLCLG GIGLMSFYLIADPALLWIPMIGVGFAWASILSVPYAILSTSLPGNKLGVYMGIFNFFIVIPQLVAATVLGFILKSLFGNE PIYALILGGSAMILAALSVLFVPAREQEPGRSNAAAQV
Sequences:
>Translated_518_residues MTSHTSPLKDKPPLSFWQIFNMCFGFLGIQFGFALQNANVSRIFQTLGASIDDIPILWIAGPLTGLLVQPIVGYLSDNTW NRFGRRRPYFLIGAVLTTLALFIMPHSPYLWVAAGMLWIMDASINIAMEPFRAFVGDKLPESQRAKGFAMQSFFIGIGAV VASALPYLLSNFAGVSNIAPEGQIADTVRYSFYLGGVVLLAAVGWTIISSREYSPEELSRFKGHEQSGFERHHGRTPEAY RKGALVWSTLGLAITAATFAADLDKQLYLLGLGVFAFGPLQWYCAQRLSAAGKRSGKLGMVFEVVDDLFHMPHAMKRLAL VQFFSWFALFAMWIYTTAAVTSYHYHSSDVLSKAYNDGADWVGVLFASYNGFAALAAMVIPLQCMLLGLKGAHIMNLCLG GIGLMSFYLIADPALLWIPMIGVGFAWASILSVPYAILSTSLPGNKLGVYMGIFNFFIVIPQLVAATVLGFILKSLFGNE PIYALILGGSAMILAALSVLFVPAREQEPGRSNAAAQV >Mature_517_residues TSHTSPLKDKPPLSFWQIFNMCFGFLGIQFGFALQNANVSRIFQTLGASIDDIPILWIAGPLTGLLVQPIVGYLSDNTWN RFGRRRPYFLIGAVLTTLALFIMPHSPYLWVAAGMLWIMDASINIAMEPFRAFVGDKLPESQRAKGFAMQSFFIGIGAVV ASALPYLLSNFAGVSNIAPEGQIADTVRYSFYLGGVVLLAAVGWTIISSREYSPEELSRFKGHEQSGFERHHGRTPEAYR KGALVWSTLGLAITAATFAADLDKQLYLLGLGVFAFGPLQWYCAQRLSAAGKRSGKLGMVFEVVDDLFHMPHAMKRLALV QFFSWFALFAMWIYTTAAVTSYHYHSSDVLSKAYNDGADWVGVLFASYNGFAALAAMVIPLQCMLLGLKGAHIMNLCLGG IGLMSFYLIADPALLWIPMIGVGFAWASILSVPYAILSTSLPGNKLGVYMGIFNFFIVIPQLVAATVLGFILKSLFGNEP IYALILGGSAMILAALSVLFVPAREQEPGRSNAAAQV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI61636000, Length=158, Percent_Identity=28.4810126582279, Blast_Score=67, Evalue=5e-11, Organism=Homo sapiens, GI61635915, Length=175, Percent_Identity=28, Blast_Score=66, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56520; Mature: 56389
Theoretical pI: Translated: 8.74; Mature: 8.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSHTSPLKDKPPLSFWQIFNMCFGFLGIQFGFALQNANVSRIFQTLGASIDDIPILWIA CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEH GPLTGLLVQPIVGYLSDNTWNRFGRRRPYFLIGAVLTTLALFIMPHSPYLWVAAGMLWIM HHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH DASINIAMEPFRAFVGDKLPESQRAKGFAMQSFFIGIGAVVASALPYLLSNFAGVSNIAP CCCCHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC EGQIADTVRYSFYLGGVVLLAAVGWTIISSREYSPEELSRFKGHEQSGFERHHGRTPEAY CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHCCCCCHHH RKGALVWSTLGLAITAATFAADLDKQLYLLGLGVFAFGPLQWYCAQRLSAAGKRSGKLGM HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH VFEVVDDLFHMPHAMKRLALVQFFSWFALFAMWIYTTAAVTSYHYHSSDVLSKAYNDGAD HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCH WVGVLFASYNGFAALAAMVIPLQCMLLGLKGAHIMNLCLGGIGLMSFYLIADPALLWIPM HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHH IGVGFAWASILSVPYAILSTSLPGNKLGVYMGIFNFFIVIPQLVAATVLGFILKSLFGNE HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PIYALILGGSAMILAALSVLFVPAREQEPGRSNAAAQV CEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure TSHTSPLKDKPPLSFWQIFNMCFGFLGIQFGFALQNANVSRIFQTLGASIDDIPILWIA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEH GPLTGLLVQPIVGYLSDNTWNRFGRRRPYFLIGAVLTTLALFIMPHSPYLWVAAGMLWIM HHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH DASINIAMEPFRAFVGDKLPESQRAKGFAMQSFFIGIGAVVASALPYLLSNFAGVSNIAP CCCCHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC EGQIADTVRYSFYLGGVVLLAAVGWTIISSREYSPEELSRFKGHEQSGFERHHGRTPEAY CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHCCCCCHHH RKGALVWSTLGLAITAATFAADLDKQLYLLGLGVFAFGPLQWYCAQRLSAAGKRSGKLGM HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH VFEVVDDLFHMPHAMKRLALVQFFSWFALFAMWIYTTAAVTSYHYHSSDVLSKAYNDGAD HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCH WVGVLFASYNGFAALAAMVIPLQCMLLGLKGAHIMNLCLGGIGLMSFYLIADPALLWIPM HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHH IGVGFAWASILSVPYAILSTSLPGNKLGVYMGIFNFFIVIPQLVAATVLGFILKSLFGNE HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PIYALILGGSAMILAALSVLFVPAREQEPGRSNAAAQV CEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA