Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119774793

Identifier: 119774793

GI number: 119774793

Start: 2023478

End: 2025034

Strand: Reverse

Name: 119774793

Synonym: Sama_1657

Alternate gene names: NA

Gene position: 2025034-2023478 (Counterclockwise)

Preceding gene: 119774795

Following gene: 119774792

Centisome position: 47.03

GC content: 55.3

Gene sequence:

>1557_bases
ATGACTTCCCACACATCCCCACTCAAAGATAAGCCGCCACTGTCATTCTGGCAGATTTTCAACATGTGTTTCGGCTTCCT
CGGTATCCAGTTTGGCTTTGCACTGCAAAATGCCAACGTCAGCCGTATTTTTCAGACCCTGGGCGCCAGCATCGATGATA
TCCCCATCCTGTGGATAGCGGGCCCCCTCACCGGTCTCCTGGTACAGCCCATCGTGGGCTATCTGTCCGACAACACCTGG
AATCGTTTTGGCCGTCGTCGCCCCTACTTTCTGATTGGCGCTGTGCTGACCACACTGGCGCTGTTTATCATGCCCCACTC
GCCCTATCTGTGGGTGGCAGCGGGTATGCTGTGGATAATGGATGCCTCTATCAATATCGCCATGGAGCCATTTCGCGCCT
TCGTAGGCGATAAATTGCCGGAGTCACAGCGGGCAAAAGGTTTTGCCATGCAGAGCTTTTTTATCGGCATAGGCGCCGTG
GTGGCCTCCGCGCTGCCTTATCTGCTGTCTAATTTTGCCGGTGTCTCCAATATCGCGCCTGAAGGACAAATTGCCGACAC
CGTGCGTTACTCCTTTTATCTTGGCGGTGTTGTGCTGCTTGCAGCCGTTGGCTGGACCATTATCAGCAGCCGCGAATACA
GCCCGGAAGAACTCAGCCGCTTTAAGGGGCACGAGCAATCCGGGTTTGAACGCCACCATGGTCGTACGCCAGAGGCTTAC
CGCAAAGGCGCTCTGGTATGGAGCACTCTGGGCCTTGCCATCACAGCAGCAACCTTTGCCGCCGATCTGGATAAACAACT
GTATCTGCTTGGTCTTGGTGTATTCGCCTTTGGCCCGCTGCAATGGTACTGCGCCCAGCGTTTAAGCGCGGCGGGCAAGC
GCAGCGGCAAGCTTGGAATGGTATTTGAAGTGGTAGACGACCTCTTCCACATGCCCCATGCCATGAAGCGTCTGGCGCTG
GTGCAGTTTTTCTCCTGGTTTGCGCTCTTTGCCATGTGGATTTACACCACGGCGGCGGTGACCTCGTATCACTATCACAG
CAGTGATGTGCTCTCCAAAGCCTACAATGACGGCGCCGACTGGGTTGGTGTGCTCTTTGCCTCATACAACGGCTTTGCGG
CACTGGCTGCCATGGTGATCCCGCTGCAGTGTATGCTACTGGGCCTTAAGGGCGCTCACATCATGAATTTGTGCCTTGGC
GGGATTGGGCTGATGAGCTTTTACCTGATTGCCGATCCTGCTCTGCTGTGGATACCCATGATAGGGGTTGGTTTTGCATG
GGCCTCTATCCTGTCTGTGCCCTATGCCATACTCTCCACCAGCCTGCCGGGCAACAAGCTCGGTGTATACATGGGGATCT
TCAACTTTTTCATTGTGATCCCCCAGCTGGTGGCCGCCACAGTGCTTGGTTTTATTCTCAAGAGCCTGTTTGGCAATGAA
CCCATATACGCTTTGATCCTCGGTGGCAGCGCCATGATATTGGCCGCCCTGTCAGTACTATTCGTCCCTGCCAGAGAGCA
GGAACCCGGGCGCAGCAATGCCGCTGCCCAGGTCTAA

Upstream 100 bases:

>100_bases
CGAGCGTCTGAGGGAGGCTCTCGCCGCTGATTTTTTGTATCCGATAATAAAAGGGCTGCCGCGAGTTCATTGCGGTCAAA
GCACCCACGACAGGACACCT

Downstream 100 bases:

>100_bases
TTATCAGGGAGACGCTTTCGTGCCAGTGACCCATTCTTCTTCGCTTCGTGCCCTCAGCCTTGCCATAGCAGCCGCGCTTG
GTGTGTCTGCCTGCCAAAAG

Product: major facilitator transporter

Products: NA

Alternate protein names: Sugar Transporter; Transporter Facilitator Family; Facilitator Superfamily Permease; Facilitator Superfamily Protein; SugarCation Symporter; Facilitator Superfamily Transporter Permease; Cytoplasmic Membrane Maltose Transporter MalY; Transport Protein Facilitator Superfamily Protein; MFS Superfamily Sugcific Permease; Facilitator Superfamily Transmembrane Protein; Facilitator Family Transporter; Sucrose Transporter Protein

Number of amino acids: Translated: 518; Mature: 517

Protein sequence:

>518_residues
MTSHTSPLKDKPPLSFWQIFNMCFGFLGIQFGFALQNANVSRIFQTLGASIDDIPILWIAGPLTGLLVQPIVGYLSDNTW
NRFGRRRPYFLIGAVLTTLALFIMPHSPYLWVAAGMLWIMDASINIAMEPFRAFVGDKLPESQRAKGFAMQSFFIGIGAV
VASALPYLLSNFAGVSNIAPEGQIADTVRYSFYLGGVVLLAAVGWTIISSREYSPEELSRFKGHEQSGFERHHGRTPEAY
RKGALVWSTLGLAITAATFAADLDKQLYLLGLGVFAFGPLQWYCAQRLSAAGKRSGKLGMVFEVVDDLFHMPHAMKRLAL
VQFFSWFALFAMWIYTTAAVTSYHYHSSDVLSKAYNDGADWVGVLFASYNGFAALAAMVIPLQCMLLGLKGAHIMNLCLG
GIGLMSFYLIADPALLWIPMIGVGFAWASILSVPYAILSTSLPGNKLGVYMGIFNFFIVIPQLVAATVLGFILKSLFGNE
PIYALILGGSAMILAALSVLFVPAREQEPGRSNAAAQV

Sequences:

>Translated_518_residues
MTSHTSPLKDKPPLSFWQIFNMCFGFLGIQFGFALQNANVSRIFQTLGASIDDIPILWIAGPLTGLLVQPIVGYLSDNTW
NRFGRRRPYFLIGAVLTTLALFIMPHSPYLWVAAGMLWIMDASINIAMEPFRAFVGDKLPESQRAKGFAMQSFFIGIGAV
VASALPYLLSNFAGVSNIAPEGQIADTVRYSFYLGGVVLLAAVGWTIISSREYSPEELSRFKGHEQSGFERHHGRTPEAY
RKGALVWSTLGLAITAATFAADLDKQLYLLGLGVFAFGPLQWYCAQRLSAAGKRSGKLGMVFEVVDDLFHMPHAMKRLAL
VQFFSWFALFAMWIYTTAAVTSYHYHSSDVLSKAYNDGADWVGVLFASYNGFAALAAMVIPLQCMLLGLKGAHIMNLCLG
GIGLMSFYLIADPALLWIPMIGVGFAWASILSVPYAILSTSLPGNKLGVYMGIFNFFIVIPQLVAATVLGFILKSLFGNE
PIYALILGGSAMILAALSVLFVPAREQEPGRSNAAAQV
>Mature_517_residues
TSHTSPLKDKPPLSFWQIFNMCFGFLGIQFGFALQNANVSRIFQTLGASIDDIPILWIAGPLTGLLVQPIVGYLSDNTWN
RFGRRRPYFLIGAVLTTLALFIMPHSPYLWVAAGMLWIMDASINIAMEPFRAFVGDKLPESQRAKGFAMQSFFIGIGAVV
ASALPYLLSNFAGVSNIAPEGQIADTVRYSFYLGGVVLLAAVGWTIISSREYSPEELSRFKGHEQSGFERHHGRTPEAYR
KGALVWSTLGLAITAATFAADLDKQLYLLGLGVFAFGPLQWYCAQRLSAAGKRSGKLGMVFEVVDDLFHMPHAMKRLALV
QFFSWFALFAMWIYTTAAVTSYHYHSSDVLSKAYNDGADWVGVLFASYNGFAALAAMVIPLQCMLLGLKGAHIMNLCLGG
IGLMSFYLIADPALLWIPMIGVGFAWASILSVPYAILSTSLPGNKLGVYMGIFNFFIVIPQLVAATVLGFILKSLFGNEP
IYALILGGSAMILAALSVLFVPAREQEPGRSNAAAQV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI61636000, Length=158, Percent_Identity=28.4810126582279, Blast_Score=67, Evalue=5e-11,
Organism=Homo sapiens, GI61635915, Length=175, Percent_Identity=28, Blast_Score=66, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56520; Mature: 56389

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TSHTSPLKDKPPLSFWQIFNMCFGFLGIQFGFALQNANVSRIFQTLGASIDDIPILWIA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEH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CEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA