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The map label for this gene is int [H]

Identifier: 119774770

GI number: 119774770

Start: 1999827

End: 2000741

Strand: Reverse

Name: int [H]

Synonym: Sama_1633

Alternate gene names: 119774770

Gene position: 2000741-1999827 (Counterclockwise)

Preceding gene: 119774774

Following gene: 119774767

Centisome position: 46.46

GC content: 48.2

Gene sequence:

>915_bases
ATGGCCTATCAAAGTCCGTTTCTGCAGGGCATTCGCGAAGAGATGCGGATGCGTGGTTACAGTATCAGTACAGGAAAGAC
CTATCTGTATTGGATAAAGGCCTTTATCCGCTTTCATCACAAAAGGCACCCAGTTGAGATGGGACAAGCAGAGGTCGCAC
AGTTTTTGACCTTTATCGCCAATCAACGCAATGTGGCAATAAACACCCAAAAGACGGCGTTAAACGCGCTGGTCTACCTT
TATCATAAGCACTTGCATCAGGAACTTGGCAGCCTTGGTTTTCATTACTCCAGCAAACAGCGATTCCAGCCTGTGGTACT
GACCGCTGATGAAGTAAAGCGTATCCTGAATTGTCTGGAAGGACGTAGCCGTCTGATTGTCGAAATACTTTACGGTAGTG
GCTTGCGGATCTCCGAATGTCTCAGACTCAGGGTCCAGGACGTCGATCTGGAACATCTGTCTTTAACAGTGCGGGACGGT
AAAGGCCGTAAAGATCGCAAAACACTGCTCAGCCAACATTGTGCGACGGCATTGCAATCTTACATAACCTGCGCCACAGC
CCTTCAACAGAAAGATAACCTACAAGGCCTTGGGCCATCGCTGCCCTATGCACTTGGGCGCAAATATCCCAACGCGTTTA
GAAAATCTATCTGGATGTTTATCTTCCCATCACATGCAATCTGCCATCATCCCATTACCGGGGTGTTATGTCGGCATCAT
CTTCATCAGAGTGTTGTGCGTAAAGCACTGGCGGTTGCTGTTGCTAAATCAGGGGTCAACAAGCGGGTGACTTGTCACAC
TTTCCGTCACTCCTTTATAAAATACTTCCCTGTATTTTCACCTTTGGGCCAGCGGAGCTGTTCAAATTCAGTCCGGCTGA
ATTTGTGCCACCCATTTACTTCAGGCCGGTTATGA

Upstream 100 bases:

>100_bases
GTGCTTCAGAAATAGTGCGCACATTTTTTACCATTTGGAGTGTCGAATTCGTCTGTTTTGAAATAACACTGTACGTACAT
ACAGTTTTCAGGTTTTTGAC

Downstream 100 bases:

>100_bases
CATTCGCACTGTGCAGGAATTGCTTGGCCACAATGACGTCAAGACAACTCAAATATACACCCACGTGCTGGGACAACACT
ATGCCGGAACAGTGAGCCCG

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: E2 protein [H]

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MAYQSPFLQGIREEMRMRGYSISTGKTYLYWIKAFIRFHHKRHPVEMGQAEVAQFLTFIANQRNVAINTQKTALNALVYL
YHKHLHQELGSLGFHYSSKQRFQPVVLTADEVKRILNCLEGRSRLIVEILYGSGLRISECLRLRVQDVDLEHLSLTVRDG
KGRKDRKTLLSQHCATALQSYITCATALQQKDNLQGLGPSLPYALGRKYPNAFRKSIWMFIFPSHAICHHPITGVLCRHH
LHQSVVRKALAVAVAKSGVNKRVTCHTFRHSFIKYFPVFSPLGQRSCSNSVRLNLCHPFTSGRL

Sequences:

>Translated_304_residues
MAYQSPFLQGIREEMRMRGYSISTGKTYLYWIKAFIRFHHKRHPVEMGQAEVAQFLTFIANQRNVAINTQKTALNALVYL
YHKHLHQELGSLGFHYSSKQRFQPVVLTADEVKRILNCLEGRSRLIVEILYGSGLRISECLRLRVQDVDLEHLSLTVRDG
KGRKDRKTLLSQHCATALQSYITCATALQQKDNLQGLGPSLPYALGRKYPNAFRKSIWMFIFPSHAICHHPITGVLCRHH
LHQSVVRKALAVAVAKSGVNKRVTCHTFRHSFIKYFPVFSPLGQRSCSNSVRLNLCHPFTSGRL
>Mature_303_residues
AYQSPFLQGIREEMRMRGYSISTGKTYLYWIKAFIRFHHKRHPVEMGQAEVAQFLTFIANQRNVAINTQKTALNALVYLY
HKHLHQELGSLGFHYSSKQRFQPVVLTADEVKRILNCLEGRSRLIVEILYGSGLRISECLRLRVQDVDLEHLSLTVRDGK
GRKDRKTLLSQHCATALQSYITCATALQQKDNLQGLGPSLPYALGRKYPNAFRKSIWMFIFPSHAICHHPITGVLCRHHL
HQSVVRKALAVAVAKSGVNKRVTCHTFRHSFIKYFPVFSPLGQRSCSNSVRLNLCHPFTSGRL

Specific function: Putative integrase believed to be involved in the insertion of antibiotic resistance genes into plasmids and transposons [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR011946
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34784; Mature: 34653

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYQSPFLQGIREEMRMRGYSISTGKTYLYWIKAFIRFHHKRHPVEMGQAEVAQFLTFIA
CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHH
NQRNVAINTQKTALNALVYLYHKHLHQELGSLGFHYSSKQRFQPVVLTADEVKRILNCLE
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECHHHHHHHHHHHC
GRSRLIVEILYGSGLRISECLRLRVQDVDLEHLSLTVRDGKGRKDRKTLLSQHCATALQS
CCHHEEEHEECCCCCCHHHHHHHHHHCCCHHHEEEEEECCCCCHHHHHHHHHHHHHHHHH
YITCATALQQKDNLQGLGPSLPYALGRKYPNAFRKSIWMFIFPSHAICHHPITGVLCRHH
HHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHCEEEEECCCCHHHHCCHHHHHHHHH
LHQSVVRKALAVAVAKSGVNKRVTCHTFRHSFIKYFPVFSPLGQRSCSNSVRLNLCHPFT
HHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHCHHHHHCCCCCCEEEEECCCC
SGRL
CCCC
>Mature Secondary Structure 
AYQSPFLQGIREEMRMRGYSISTGKTYLYWIKAFIRFHHKRHPVEMGQAEVAQFLTFIA
CCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHH
NQRNVAINTQKTALNALVYLYHKHLHQELGSLGFHYSSKQRFQPVVLTADEVKRILNCLE
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECHHHHHHHHHHHC
GRSRLIVEILYGSGLRISECLRLRVQDVDLEHLSLTVRDGKGRKDRKTLLSQHCATALQS
CCHHEEEHEECCCCCCHHHHHHHHHHCCCHHHEEEEEECCCCCHHHHHHHHHHHHHHHHH
YITCATALQQKDNLQGLGPSLPYALGRKYPNAFRKSIWMFIFPSHAICHHPITGVLCRHH
HHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHCEEEEECCCCHHHHCCHHHHHHHHH
LHQSVVRKALAVAVAKSGVNKRVTCHTFRHSFIKYFPVFSPLGQRSCSNSVRLNLCHPFT
HHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHCHHHHHCCCCCCEEEEECCCC
SGRL
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2821509; 2823258; 3054482; 8195081; 2188588 [H]