Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119774725

Identifier: 119774725

GI number: 119774725

Start: 1933533

End: 1935608

Strand: Direct

Name: 119774725

Synonym: Sama_1588

Alternate gene names: NA

Gene position: 1933533-1935608 (Clockwise)

Preceding gene: 119774724

Following gene: 119774726

Centisome position: 44.9

GC content: 51.45

Gene sequence:

>2076_bases
ATGAAAAGTGTTAAAAAGGGTTTTAACAAGACGGCGCTTTCTTTGGGGGTTGCGTCAGCCCTGAGTCTGGGAAGTATTCC
TGCTCAGGCGGTATCGTTCGATTGGGGCGAAGTGCAAGGGTCTTTCGACTCGACCTTCACTCTTGGTGCCAGTTGGCGCG
TGGAAAAACGCGACTGGGACGGCCAAATCGGTAAGGTAAATCACCCCAGATTTGATTGGTCCAACTATTCTGCATTTGGC
AACACCAAGTACACCTCGGCGGAAATCTGGGCTCAACCCGGTTCATACTCAAGTAACAACGACTTGAGCAACTTACTCTA
TTCCCAGGGCGACACCACGTCTGAAATTTTCAAAGGTTTGCATGAACTGTCGCTGAAATACGAAAACTTCGGTCTTTTCG
CCCGTGGCATGTATTTCTATGACCGTAAGCTAAACGACGGTGACTTCGGTTTTTCTGATCCCATCACAGGTAAAGAGTTC
GATCCCTGTGCAGACAAACGCGCGAAGGAATTGCAGTGTAAGGACATCCGTCTGCTGGATGCCTTTGTTTATGCCAACTT
TGACTTTAATGATGGCCAGAATCCGCTGACTGTTCGCGTCGGTAATCAGGTGGTCTCATGGGGCGAAAGTACGCTGATTG
CCCACGGCATAGGTGTAATTAACCCGGTTGACCTGAACATCCTTAATGCACCCGGTGCGGAGCTCAAAGAGGCTTTCCGT
CCACAGGGTATGGTGTGGGCGTCTCTGGGTGTGACAGAAAATCTCAGTCTGGAAGCCTTTTATCAGTATGACTGGCAGCC
CATTTGGGTTCCAACACCGGGTTCGATTTTTGCCACCAACGACTTTGCCGGTTATGGCGGTTATCAGCAAAACGCCCAGC
TTGGTTTTAACGCCAACCCGGATATCAATCTGGACTTCATTCAGGCCGAGTATGAAAAACTGGCACAAATGATTGTAGCC
GGCGCCTTTTCATCTCCAGAAGGCACACAAAGTCTCATCCGTGCTGCACTGGCCTATCCAACCAAGGTAACCCTGATTCA
GGACGAAGCCGAGGCGAGCGATGATGGTCAATATGGTATTAAGCTTGGGTACTACGCCCCTGAGCTGGGTGAAACCGAGT
TTGGTCTTTACTATATGAACTACCACAGTCGTCGTCCGCTTATCAGCGGCACTGCGGCGAACTTCGACTTGGTTCCTCTG
CTTACTGACATGACCACTGTTGGCATGAATGCCGGTAATATCGATCGCAACCTCATCCTCGGACTCGAAAGTTTCTCCAA
GGCTCAGATTGTGTATCCGGAAGACATCCAGCTCTACGGTTTCAGCTTTAACACCCTGATTGGCGATACCTCGGTTGCCG
GTGAAATTGCTCACCGTCAGGACGAGCCGCTGCAGATCGACGACGTGGAACTCCTGTTTGCCGCGATGCCGCAGCAGCTG
GCGAATTCCAATGTGGTCGGCGGTGATTACAGCTACCTCGATGGTCTGTCTCAGTACACCTCTTACTTCAATAAAGATGT
GAATCCAGGTGATTATGCCGAAGGCTTTATCCGAGTGGATACCACTCAGGCCCAGTTCACCCTGACACACCTCTTTGGCC
CAACTCTGGGGACTGACAACCTGACCATGCTTGCGGAAGTGGGTGGCATCTGGATCCACGACATGCCATCACCTGACGAG
CTTCGTCTCAATGGTCCTGGCACTGCCCGCAGCGGCGGTAAAGAAGGGTACGAAGCCATTATTCAGGTGCTGCACAATGG
CCCTGAAACCAACCCATTCCCAACAGATTTTGCCTGGGGTTACCGTATTGTGGCCAAGGCCGACTACAACAACCTGTTTG
CCGGTATCAACGTGTCGCCACGGGTTATCTGGTCACACGATGTTGACGGTATCACGCCAGATCCCCTGTTCCTGTTCACC
GAGGGACGCAAGTCAGTGGCCGTGGGTATCAACTTTGACTACCAGAGCCGTTGGGGCGCCGATCTGTCTTACAACAGCTT
CTTCGGTGGTGTAGGTACCACCAACGCCATGAGCGATCGCGATTATGTGTCGTTCAATATCAAGTATTCTATCTAA

Upstream 100 bases:

>100_bases
ACACGCAATTGCTGTAACAATGGTGTTACCTGTAGGCTAACCACATGTTGGTTGCAATACCTATAAAAAAGAATCCAGCA
GGTTACGGAGAGAAGCTAAC

Downstream 100 bases:

>100_bases
AGGACAATAACAATGAAGAAACTTGCGATATTGTCTGCAGCGGTAATGTTCGCCTTGGGTGGCGGCGCTGCAGTGGCGAA
AGTCTCCGAGGCCGAAGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 691; Mature: 691

Protein sequence:

>691_residues
MKSVKKGFNKTALSLGVASALSLGSIPAQAVSFDWGEVQGSFDSTFTLGASWRVEKRDWDGQIGKVNHPRFDWSNYSAFG
NTKYTSAEIWAQPGSYSSNNDLSNLLYSQGDTTSEIFKGLHELSLKYENFGLFARGMYFYDRKLNDGDFGFSDPITGKEF
DPCADKRAKELQCKDIRLLDAFVYANFDFNDGQNPLTVRVGNQVVSWGESTLIAHGIGVINPVDLNILNAPGAELKEAFR
PQGMVWASLGVTENLSLEAFYQYDWQPIWVPTPGSIFATNDFAGYGGYQQNAQLGFNANPDINLDFIQAEYEKLAQMIVA
GAFSSPEGTQSLIRAALAYPTKVTLIQDEAEASDDGQYGIKLGYYAPELGETEFGLYYMNYHSRRPLISGTAANFDLVPL
LTDMTTVGMNAGNIDRNLILGLESFSKAQIVYPEDIQLYGFSFNTLIGDTSVAGEIAHRQDEPLQIDDVELLFAAMPQQL
ANSNVVGGDYSYLDGLSQYTSYFNKDVNPGDYAEGFIRVDTTQAQFTLTHLFGPTLGTDNLTMLAEVGGIWIHDMPSPDE
LRLNGPGTARSGGKEGYEAIIQVLHNGPETNPFPTDFAWGYRIVAKADYNNLFAGINVSPRVIWSHDVDGITPDPLFLFT
EGRKSVAVGINFDYQSRWGADLSYNSFFGGVGTTNAMSDRDYVSFNIKYSI

Sequences:

>Translated_691_residues
MKSVKKGFNKTALSLGVASALSLGSIPAQAVSFDWGEVQGSFDSTFTLGASWRVEKRDWDGQIGKVNHPRFDWSNYSAFG
NTKYTSAEIWAQPGSYSSNNDLSNLLYSQGDTTSEIFKGLHELSLKYENFGLFARGMYFYDRKLNDGDFGFSDPITGKEF
DPCADKRAKELQCKDIRLLDAFVYANFDFNDGQNPLTVRVGNQVVSWGESTLIAHGIGVINPVDLNILNAPGAELKEAFR
PQGMVWASLGVTENLSLEAFYQYDWQPIWVPTPGSIFATNDFAGYGGYQQNAQLGFNANPDINLDFIQAEYEKLAQMIVA
GAFSSPEGTQSLIRAALAYPTKVTLIQDEAEASDDGQYGIKLGYYAPELGETEFGLYYMNYHSRRPLISGTAANFDLVPL
LTDMTTVGMNAGNIDRNLILGLESFSKAQIVYPEDIQLYGFSFNTLIGDTSVAGEIAHRQDEPLQIDDVELLFAAMPQQL
ANSNVVGGDYSYLDGLSQYTSYFNKDVNPGDYAEGFIRVDTTQAQFTLTHLFGPTLGTDNLTMLAEVGGIWIHDMPSPDE
LRLNGPGTARSGGKEGYEAIIQVLHNGPETNPFPTDFAWGYRIVAKADYNNLFAGINVSPRVIWSHDVDGITPDPLFLFT
EGRKSVAVGINFDYQSRWGADLSYNSFFGGVGTTNAMSDRDYVSFNIKYSI
>Mature_691_residues
MKSVKKGFNKTALSLGVASALSLGSIPAQAVSFDWGEVQGSFDSTFTLGASWRVEKRDWDGQIGKVNHPRFDWSNYSAFG
NTKYTSAEIWAQPGSYSSNNDLSNLLYSQGDTTSEIFKGLHELSLKYENFGLFARGMYFYDRKLNDGDFGFSDPITGKEF
DPCADKRAKELQCKDIRLLDAFVYANFDFNDGQNPLTVRVGNQVVSWGESTLIAHGIGVINPVDLNILNAPGAELKEAFR
PQGMVWASLGVTENLSLEAFYQYDWQPIWVPTPGSIFATNDFAGYGGYQQNAQLGFNANPDINLDFIQAEYEKLAQMIVA
GAFSSPEGTQSLIRAALAYPTKVTLIQDEAEASDDGQYGIKLGYYAPELGETEFGLYYMNYHSRRPLISGTAANFDLVPL
LTDMTTVGMNAGNIDRNLILGLESFSKAQIVYPEDIQLYGFSFNTLIGDTSVAGEIAHRQDEPLQIDDVELLFAAMPQQL
ANSNVVGGDYSYLDGLSQYTSYFNKDVNPGDYAEGFIRVDTTQAQFTLTHLFGPTLGTDNLTMLAEVGGIWIHDMPSPDE
LRLNGPGTARSGGKEGYEAIIQVLHNGPETNPFPTDFAWGYRIVAKADYNNLFAGINVSPRVIWSHDVDGITPDPLFLFT
EGRKSVAVGINFDYQSRWGADLSYNSFFGGVGTTNAMSDRDYVSFNIKYSI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 76180; Mature: 76180

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSVKKGFNKTALSLGVASALSLGSIPAQAVSFDWGEVQGSFDSTFTLGASWRVEKRDWD
CCCHHHCCCHHHHHHHHHHHHHCCCCCCHHEECCHHHCCCCCCCEEEECCEEEEECCCCC
GQIGKVNHPRFDWSNYSAFGNTKYTSAEIWAQPGSYSSNNDLSNLLYSQGDTTSEIFKGL
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHCCCCCHHHHHHHH
HELSLKYENFGLFARGMYFYDRKLNDGDFGFSDPITGKEFDPCADKRAKELQCKDIRLLD
HHHEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEE
AFVYANFDFNDGQNPLTVRVGNQVVSWGESTLIAHGIGVINPVDLNILNAPGAELKEAFR
EEEEEECCCCCCCCCEEEEECCEEECCCCCEEEECCCCCCCCCCEEEECCCCHHHHHHHC
PQGMVWASLGVTENLSLEAFYQYDWQPIWVPTPGSIFATNDFAGYGGYQQNAQLGFNANP
CCCEEEEECCCCCCCCEEEEEEECCEEEEECCCCCEEEECCCCCCCCCCCCCEECCCCCC
DINLDFIQAEYEKLAQMIVAGAFSSPEGTQSLIRAALAYPTKVTLIQDEAEASDDGQYGI
CCEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEE
KLGYYAPELGETEFGLYYMNYHSRRPLISGTAANFDLVPLLTDMTTVGMNAGNIDRNLIL
EEEEECCCCCCCEEEEEEEEECCCCCEEECCCCCEEEEHHHHHHHHHCCCCCCCCCEEEE
GLESFSKAQIVYPEDIQLYGFSFNTLIGDTSVAGEIAHRQDEPLQIDDVELLFAAMPQQL
EECCCCCEEEECCCCEEEEEEEEHHEECCCHHHHHHHHCCCCCCEECHHHHHHHHHHHHH
ANSNVVGGDYSYLDGLSQYTSYFNKDVNPGDYAEGFIRVDTTQAQFTLTHLFGPTLGTDN
HCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCC
LTMLAEVGGIWIHDMPSPDELRLNGPGTARSGGKEGYEAIIQVLHNGPETNPFPTDFAWG
EEEEEECCCEEEECCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
YRIVAKADYNNLFAGINVSPRVIWSHDVDGITPDPLFLFTEGRKSVAVGINFDYQSRWGA
EEEEEEECCCCEEECCCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCC
DLSYNSFFGGVGTTNAMSDRDYVSFNIKYSI
CCCCCCEECCCCCCCCCCCCCEEEEEEEEEC
>Mature Secondary Structure
MKSVKKGFNKTALSLGVASALSLGSIPAQAVSFDWGEVQGSFDSTFTLGASWRVEKRDWD
CCCHHHCCCHHHHHHHHHHHHHCCCCCCHHEECCHHHCCCCCCCEEEECCEEEEECCCCC
GQIGKVNHPRFDWSNYSAFGNTKYTSAEIWAQPGSYSSNNDLSNLLYSQGDTTSEIFKGL
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHCCCCCHHHHHHHH
HELSLKYENFGLFARGMYFYDRKLNDGDFGFSDPITGKEFDPCADKRAKELQCKDIRLLD
HHHEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEE
AFVYANFDFNDGQNPLTVRVGNQVVSWGESTLIAHGIGVINPVDLNILNAPGAELKEAFR
EEEEEECCCCCCCCCEEEEECCEEECCCCCEEEECCCCCCCCCCEEEECCCCHHHHHHHC
PQGMVWASLGVTENLSLEAFYQYDWQPIWVPTPGSIFATNDFAGYGGYQQNAQLGFNANP
CCCEEEEECCCCCCCCEEEEEEECCEEEEECCCCCEEEECCCCCCCCCCCCCEECCCCCC
DINLDFIQAEYEKLAQMIVAGAFSSPEGTQSLIRAALAYPTKVTLIQDEAEASDDGQYGI
CCEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEE
KLGYYAPELGETEFGLYYMNYHSRRPLISGTAANFDLVPLLTDMTTVGMNAGNIDRNLIL
EEEEECCCCCCCEEEEEEEEECCCCCEEECCCCCEEEEHHHHHHHHHCCCCCCCCCEEEE
GLESFSKAQIVYPEDIQLYGFSFNTLIGDTSVAGEIAHRQDEPLQIDDVELLFAAMPQQL
EECCCCCEEEECCCCEEEEEEEEHHEECCCHHHHHHHHCCCCCCEECHHHHHHHHHHHHH
ANSNVVGGDYSYLDGLSQYTSYFNKDVNPGDYAEGFIRVDTTQAQFTLTHLFGPTLGTDN
HCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCC
LTMLAEVGGIWIHDMPSPDELRLNGPGTARSGGKEGYEAIIQVLHNGPETNPFPTDFAWG
EEEEEECCCEEEECCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
YRIVAKADYNNLFAGINVSPRVIWSHDVDGITPDPLFLFTEGRKSVAVGINFDYQSRWGA
EEEEEEECCCCEEECCCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCC
DLSYNSFFGGVGTTNAMSDRDYVSFNIKYSI
CCCCCCEECCCCCCCCCCCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA