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The map label for this gene is ydhC [H]

Identifier: 119774665

GI number: 119774665

Start: 1858155

End: 1858826

Strand: Reverse

Name: ydhC [H]

Synonym: Sama_1528

Alternate gene names: 119774665

Gene position: 1858826-1858155 (Counterclockwise)

Preceding gene: 119774666

Following gene: 119774664

Centisome position: 43.17

GC content: 52.38

Gene sequence:

>672_bases
ATGAGTCGACACACGCCTATCGTTCATAAAACTCGTACTCAGGTCGTGGTAGAAGTACTCAGAGAGAAAATTCTCTCCGG
GGAAATTGCTGCCGGAGAGCCCTTGCGTCAGAGCGCATTGGCCGAAGCGCTTAATGTAAGCCGTATTCCTGTCCGTGAAG
CCCTGTTGCAACTTGAAGCCGAAGGTCTGGTGAAGTTTGAGGCCCACAAAGGCGCCACCGCCACCGAGCTGTCTGTCGCA
CAGGTAACCGAATTGTTTGAACTCAGGGCGCTGATTGAAACAGATCTGCTTGCAAAAGCCATCCCGAATCTGCAAGATGA
AGACCTGATCCAGGCCGAGAAAGTGCTGGAACAACTGGAATCTGCTTTTAAACAAGAAGATGCCGTTGGAAGCTGGGCCG
AGCTCAACACCAAATTCCATACTACGCTGTATCAGGCTGCCAACCGTCCACACACATTGGAAGTGGTTCACGGTTTAAAT
ACCAATTGTGACCGTTATATCAGGCTGCAGTTGTTGCTGACCGGCGGGATCCCGCGGGCCGAGCAAGACCACAGAGATCT
GCTGACTTATTGCAAGCAGAAACAAACCGACAAGGCCGTCGTCCTGCTGCGCCAGCACATATTGCACGCCGCAGAGTCCA
TTCGCGATCTGGTTGCCGAACAGGTCAAATGA

Upstream 100 bases:

>100_bases
TAAGCCAATTGATAAAGGGAAACCCATGGTTTCCCTTTATTTATGGCTGAGTTGGCGTTAATCTTAGGCGATCAAAATGT
CTTGGTATAAAGAATAAAAA

Downstream 100 bases:

>100_bases
TAAAAGACAACAGGCTGTTGTTTTAAGCGCTGTTGTCGGATATTCAAGGCAGTCCCAAGGCACTGCCTTTTTTGTTTGAG
AGAATTATCAATGCAGTACG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MSRHTPIVHKTRTQVVVEVLREKILSGEIAAGEPLRQSALAEALNVSRIPVREALLQLEAEGLVKFEAHKGATATELSVA
QVTELFELRALIETDLLAKAIPNLQDEDLIQAEKVLEQLESAFKQEDAVGSWAELNTKFHTTLYQAANRPHTLEVVHGLN
TNCDRYIRLQLLLTGGIPRAEQDHRDLLTYCKQKQTDKAVVLLRQHILHAAESIRDLVAEQVK

Sequences:

>Translated_223_residues
MSRHTPIVHKTRTQVVVEVLREKILSGEIAAGEPLRQSALAEALNVSRIPVREALLQLEAEGLVKFEAHKGATATELSVA
QVTELFELRALIETDLLAKAIPNLQDEDLIQAEKVLEQLESAFKQEDAVGSWAELNTKFHTTLYQAANRPHTLEVVHGLN
TNCDRYIRLQLLLTGGIPRAEQDHRDLLTYCKQKQTDKAVVLLRQHILHAAESIRDLVAEQVK
>Mature_222_residues
SRHTPIVHKTRTQVVVEVLREKILSGEIAAGEPLRQSALAEALNVSRIPVREALLQLEAEGLVKFEAHKGATATELSVAQ
VTELFELRALIETDLLAKAIPNLQDEDLIQAEKVLEQLESAFKQEDAVGSWAELNTKFHTTLYQAANRPHTLEVVHGLNT
NCDRYIRLQLLLTGGIPRAEQDHRDLLTYCKQKQTDKAVVLLRQHILHAAESIRDLVAEQVK

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=208, Percent_Identity=25.9615384615385, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082149, Length=196, Percent_Identity=28.0612244897959, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24984; Mature: 24853

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS50949 HTH_GNTR ; PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRHTPIVHKTRTQVVVEVLREKILSGEIAAGEPLRQSALAEALNVSRIPVREALLQLEA
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
EGLVKFEAHKGATATELSVAQVTELFELRALIETDLLAKAIPNLQDEDLIQAEKVLEQLE
HCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
SAFKQEDAVGSWAELNTKFHTTLYQAANRPHTLEVVHGLNTNCDRYIRLQLLLTGGIPRA
HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEHHHHCCCCCHHHHEEEEEEEECCCCCC
EQDHRDLLTYCKQKQTDKAVVLLRQHILHAAESIRDLVAEQVK
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SRHTPIVHKTRTQVVVEVLREKILSGEIAAGEPLRQSALAEALNVSRIPVREALLQLEA
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
EGLVKFEAHKGATATELSVAQVTELFELRALIETDLLAKAIPNLQDEDLIQAEKVLEQLE
HCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
SAFKQEDAVGSWAELNTKFHTTLYQAANRPHTLEVVHGLNTNCDRYIRLQLLLTGGIPRA
HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEHHHHCCCCCHHHHEEEEEEEECCCCCC
EQDHRDLLTYCKQKQTDKAVVLLRQHILHAAESIRDLVAEQVK
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]