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The map label for this gene is yeiE [H]

Identifier: 119774638

GI number: 119774638

Start: 1819370

End: 1820284

Strand: Reverse

Name: yeiE [H]

Synonym: Sama_1501

Alternate gene names: 119774638

Gene position: 1820284-1819370 (Counterclockwise)

Preceding gene: 119774640

Following gene: 119774636

Centisome position: 42.27

GC content: 56.72

Gene sequence:

>915_bases
ATGAAATACACCCTCAAACAAATGTCGGTTTTTGATGCTGTCGCCAGTCTCGAAAGTGTGTCCGGCGCGGCCCGTAAACT
GTCCATGACCCAGTCCGCCGTCAGTATGTCGCTGCAGCAGCTGGAAAGCTTGCTCGGCAGGCCGCTCTTTATCCGTCAGG
GAAACCGATTGATGTTGAGCCATTGGGGACACTGGCTCAGACCCCGCGCCCGCAAGCTACTCGCCGATGCCCAGCAAATC
GCCATGGGGCTGCACGATCAGCACCTCCTATCCGGCAGTTTATCCATGGGGGCCAGCCAAACCGCGGCGGAACACCTGCT
TGGGGATCTCATCAGCCGCCTTGATAGCGACTTTCCACAAATCCATATTGAGCTGATGGTCGAAAACACCGAAAACGTCA
TCACGGCGGTGCAGGAATATGAGGTGGACTTTGGCATCATCGAAGGGCGCAGCGACGATGCCCATTTGGTGTTGGAGCCC
TGGCTTGATGATCATCTTGTGGTGATTGCCGCGCCCCACCATCCCTACGGCAAGTATGGCAATGTCAGCCTGTCACAGCT
GGAGCAAGCTAAATGGGTACTGCGGGAGCAAGGCGCCGGCACCCGCCGCATTTTCGATGCCGCCATCCATGGCAATCTCG
ACAGATTAAACGTATGGCGGGAGTACGAGCAGGTACCTGTCCTGAAGGCGTTGGTAAAAAATGGTCCCTACCTCAGTGCA
CTGCCCTATCTGGATGTGGAGCGGGATGTGGCCGCCGGGCAACTCATTATCCTGTCAACGCCCAAACTGAACATGAAGCG
CCAGTTGTCTTTCGTATGGCGCGCCGATGCCACTGAAAACCCGCTGCGTGACTGTGTGATTTCGGAAGCAAAAAGGCTCG
CGCGCCACAGGCACACGAGCCAGGAGAAGATCTGA

Upstream 100 bases:

>100_bases
GGGCAACAGAATTCAAAAACTCTGCCATTGGCCATTTAAGGCAAGGCCACGCGCCTTATAGAATGACAGGCAACCATCAA
TTCCTCTGATAGCTGCTGTC

Downstream 100 bases:

>100_bases
AAGGGATTATGCGGGCAGCTTTTCTCTGACACTTTGCAGCAATCGCAGCAAGGCATCACGGTGAATAATTCCCTTAAGCA
CCCCGGCTTCCACCACAGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MKYTLKQMSVFDAVASLESVSGAARKLSMTQSAVSMSLQQLESLLGRPLFIRQGNRLMLSHWGHWLRPRARKLLADAQQI
AMGLHDQHLLSGSLSMGASQTAAEHLLGDLISRLDSDFPQIHIELMVENTENVITAVQEYEVDFGIIEGRSDDAHLVLEP
WLDDHLVVIAAPHHPYGKYGNVSLSQLEQAKWVLREQGAGTRRIFDAAIHGNLDRLNVWREYEQVPVLKALVKNGPYLSA
LPYLDVERDVAAGQLIILSTPKLNMKRQLSFVWRADATENPLRDCVISEAKRLARHRHTSQEKI

Sequences:

>Translated_304_residues
MKYTLKQMSVFDAVASLESVSGAARKLSMTQSAVSMSLQQLESLLGRPLFIRQGNRLMLSHWGHWLRPRARKLLADAQQI
AMGLHDQHLLSGSLSMGASQTAAEHLLGDLISRLDSDFPQIHIELMVENTENVITAVQEYEVDFGIIEGRSDDAHLVLEP
WLDDHLVVIAAPHHPYGKYGNVSLSQLEQAKWVLREQGAGTRRIFDAAIHGNLDRLNVWREYEQVPVLKALVKNGPYLSA
LPYLDVERDVAAGQLIILSTPKLNMKRQLSFVWRADATENPLRDCVISEAKRLARHRHTSQEKI
>Mature_304_residues
MKYTLKQMSVFDAVASLESVSGAARKLSMTQSAVSMSLQQLESLLGRPLFIRQGNRLMLSHWGHWLRPRARKLLADAQQI
AMGLHDQHLLSGSLSMGASQTAAEHLLGDLISRLDSDFPQIHIELMVENTENVITAVQEYEVDFGIIEGRSDDAHLVLEP
WLDDHLVVIAAPHHPYGKYGNVSLSQLEQAKWVLREQGAGTRRIFDAAIHGNLDRLNVWREYEQVPVLKALVKNGPYLSA
LPYLDVERDVAAGQLIILSTPKLNMKRQLSFVWRADATENPLRDCVISEAKRLARHRHTSQEKI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=274, Percent_Identity=37.2262773722628, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1788748, Length=280, Percent_Identity=28.5714285714286, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI145693105, Length=284, Percent_Identity=24.6478873239437, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI157672245, Length=202, Percent_Identity=30.1980198019802, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787601, Length=299, Percent_Identity=25.0836120401338, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788296, Length=196, Percent_Identity=30.6122448979592, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1788626, Length=146, Percent_Identity=32.8767123287671, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787806, Length=283, Percent_Identity=24.7349823321555, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789506, Length=278, Percent_Identity=20.5035971223022, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1786401, Length=282, Percent_Identity=25.177304964539, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787879, Length=262, Percent_Identity=26.3358778625954, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87081904, Length=282, Percent_Identity=25.177304964539, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790208, Length=203, Percent_Identity=27.5862068965517, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1790399, Length=282, Percent_Identity=21.2765957446809, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34220; Mature: 34220

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYTLKQMSVFDAVASLESVSGAARKLSMTQSAVSMSLQQLESLLGRPLFIRQGNRLMLS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEHH
HWGHWLRPRARKLLADAQQIAMGLHDQHLLSGSLSMGASQTAAEHLLGDLISRLDSDFPQ
HCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCE
IHIELMVENTENVITAVQEYEVDFGIIEGRSDDAHLVLEPWLDDHLVVIAAPHHPYGKYG
EEEEEEEECCHHHHHHHHHHCCCEEEEECCCCCCEEEEECCCCCCEEEEECCCCCCCCCC
NVSLSQLEQAKWVLREQGAGTRRIFDAAIHGNLDRLNVWREYEQVPVLKALVKNGPYLSA
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
LPYLDVERDVAAGQLIILSTPKLNMKRQLSFVWRADATENPLRDCVISEAKRLARHRHTS
CCCCCCCCCCCCCEEEEEECCCCCHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC
QEKI
CCCC
>Mature Secondary Structure
MKYTLKQMSVFDAVASLESVSGAARKLSMTQSAVSMSLQQLESLLGRPLFIRQGNRLMLS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEHH
HWGHWLRPRARKLLADAQQIAMGLHDQHLLSGSLSMGASQTAAEHLLGDLISRLDSDFPQ
HCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCE
IHIELMVENTENVITAVQEYEVDFGIIEGRSDDAHLVLEPWLDDHLVVIAAPHHPYGKYG
EEEEEEEECCHHHHHHHHHHCCCEEEEECCCCCCEEEEECCCCCCEEEEECCCCCCCCCC
NVSLSQLEQAKWVLREQGAGTRRIFDAAIHGNLDRLNVWREYEQVPVLKALVKNGPYLSA
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
LPYLDVERDVAAGQLIILSTPKLNMKRQLSFVWRADATENPLRDCVISEAKRLARHRHTS
CCCCCCCCCCCCCEEEEEECCCCCHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC
QEKI
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]