| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774485
Identifier: 119774485
GI number: 119774485
Start: 1638456
End: 1638986
Strand: Reverse
Name: 119774485
Synonym: Sama_1348
Alternate gene names: NA
Gene position: 1638986-1638456 (Counterclockwise)
Preceding gene: 119774486
Following gene: 119774484
Centisome position: 38.06
GC content: 38.42
Gene sequence:
>531_bases ATGAGCCGAACAATTATCTTCGCTCTACTGATTTTTTCCGCATTAGAAGTAAAAGCCGAATGTAACTCATTACTGATAAA CGGAATAACTAATGATTTGAAACTGACGTATGAGCAATTTGATCAAACGCCCGGTAAGGGTTGGCGGGTGTTAGAGAATA AGAAATGCTACAGCGAAGCTGCCATTCTGATAGACAAATATATTCTTGAAAACAATGCTAACCAAACATCGCTTAAATCG CATTTATTGCAAATGTACGCTTTTTCTGGTGAAAGTAGTAAAGCTCTTGAAATTGTTTCAGCTGTGCTGTTACCCGACGA GCAGCAACGTAATTCGCCTTTTCTCTGGAACGATTATGTTTTGGCTACAGCTGGTTTTTTGGAAAAGGATCTTTCCAAAC TAAAGTTTCATAGAGATAACGTTGCTAAGTACGGTAAGGGCTTTAAACCCAATGAAATGAACTTGGCAACTCTGGACAGG TTAATTGAAAACTTTGACCAGACATATCAAATTGCATACATCGGTGGCTAA
Upstream 100 bases:
>100_bases GCTAACAAGGCGCAGCACTCGCGGCCTGCGGCCGCTGGGATGCCAACCGCTACGCGGTCGTCCCCCGTGTGCTTTGCGTT AGCACTAAAAGGATTTACGC
Downstream 100 bases:
>100_bases GTGCTAACAATCGTCATCAAAACGCGCCCTTTGGGCGCTCGACTCGCAACACGTTGCTCGCGTTTGTGGCGGGCGTTATA TTTCACGGAGGAATGGTGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 176; Mature: 175
Protein sequence:
>176_residues MSRTIIFALLIFSALEVKAECNSLLINGITNDLKLTYEQFDQTPGKGWRVLENKKCYSEAAILIDKYILENNANQTSLKS HLLQMYAFSGESSKALEIVSAVLLPDEQQRNSPFLWNDYVLATAGFLEKDLSKLKFHRDNVAKYGKGFKPNEMNLATLDR LIENFDQTYQIAYIGG
Sequences:
>Translated_176_residues MSRTIIFALLIFSALEVKAECNSLLINGITNDLKLTYEQFDQTPGKGWRVLENKKCYSEAAILIDKYILENNANQTSLKS HLLQMYAFSGESSKALEIVSAVLLPDEQQRNSPFLWNDYVLATAGFLEKDLSKLKFHRDNVAKYGKGFKPNEMNLATLDR LIENFDQTYQIAYIGG >Mature_175_residues SRTIIFALLIFSALEVKAECNSLLINGITNDLKLTYEQFDQTPGKGWRVLENKKCYSEAAILIDKYILENNANQTSLKSH LLQMYAFSGESSKALEIVSAVLLPDEQQRNSPFLWNDYVLATAGFLEKDLSKLKFHRDNVAKYGKGFKPNEMNLATLDRL IENFDQTYQIAYIGG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19983; Mature: 19852
Theoretical pI: Translated: 5.81; Mature: 5.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRTIIFALLIFSALEVKAECNSLLINGITNDLKLTYEQFDQTPGKGWRVLENKKCYSEA CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEECCCHHHHHH AILIDKYILENNANQTSLKSHLLQMYAFSGESSKALEIVSAVLLPDEQQRNSPFLWNDYV HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHCCCCCCEECCHH LATAGFLEKDLSKLKFHRDNVAKYGKGFKPNEMNLATLDRLIENFDQTYQIAYIGG HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECC >Mature Secondary Structure SRTIIFALLIFSALEVKAECNSLLINGITNDLKLTYEQFDQTPGKGWRVLENKKCYSEA CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEECCCHHHHHH AILIDKYILENNANQTSLKSHLLQMYAFSGESSKALEIVSAVLLPDEQQRNSPFLWNDYV HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHCCCCCCEECCHH LATAGFLEKDLSKLKFHRDNVAKYGKGFKPNEMNLATLDRLIENFDQTYQIAYIGG HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA