Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119774483

Identifier: 119774483

GI number: 119774483

Start: 1637278

End: 1637688

Strand: Reverse

Name: 119774483

Synonym: Sama_1346

Alternate gene names: NA

Gene position: 1637688-1637278 (Counterclockwise)

Preceding gene: 119774484

Following gene: 119774482

Centisome position: 38.03

GC content: 33.82

Gene sequence:

>411_bases
ATGATTTTATGGTTCTTTTTAGCTATTGGTTTCATGTTTATTTTTCAGGTCAAAGCAACCACTTTTGAGAGCTTTCATTG
GCAGTCTGCAGCAATAGCTATCGCCCCATTTTTAATTTTTATAGTCGCTTACTATTTGAATGTGCGTAAATTCAAGATGC
TCTGTATTCCAAACGAAAATGGGCTAATGATTGGCGAAAAAACAATTGAGGTAAATGCTGAAGGTATTACGGAAACAAAT
CCTCTTGGTAACTGCTTTTATAGATGGAAAGCTATTGAAGCGATAGAAGAATATGAAGGCAGCATATACATATTCGTAGA
TAACCTACTCGCACTAATTCTGCCACCTGAATCATTTACTTCAGAAGAAGAAAAAGATCAATTCAAAGGGTTAATTAAAA
AATATGTATAA

Upstream 100 bases:

>100_bases
AACTATAAATATTTCTAAAGAAGATTACTTAAAATACTCTAACTACGCGGTAAAGAGGCTATGGAAATCAAAGAATAAAA
GCACCGGGTTTTTGAGAAAT

Downstream 100 bases:

>100_bases
CAAGTTAAACCATCGGAAAACCACTCGCTACGCTCGCGTTTTCCGCTGTTTAAAGCGTTAGGGGCATACGGATGCGCTCG
TTGAAGATACATTTAAGTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MILWFFLAIGFMFIFQVKATTFESFHWQSAAIAIAPFLIFIVAYYLNVRKFKMLCIPNENGLMIGEKTIEVNAEGITETN
PLGNCFYRWKAIEAIEEYEGSIYIFVDNLLALILPPESFTSEEEKDQFKGLIKKYV

Sequences:

>Translated_136_residues
MILWFFLAIGFMFIFQVKATTFESFHWQSAAIAIAPFLIFIVAYYLNVRKFKMLCIPNENGLMIGEKTIEVNAEGITETN
PLGNCFYRWKAIEAIEEYEGSIYIFVDNLLALILPPESFTSEEEKDQFKGLIKKYV
>Mature_136_residues
MILWFFLAIGFMFIFQVKATTFESFHWQSAAIAIAPFLIFIVAYYLNVRKFKMLCIPNENGLMIGEKTIEVNAEGITETN
PLGNCFYRWKAIEAIEEYEGSIYIFVDNLLALILPPESFTSEEEKDQFKGLIKKYV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15757; Mature: 15757

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILWFFLAIGFMFIFQVKATTFESFHWQSAAIAIAPFLIFIVAYYLNVRKFKMLCIPNEN
CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCC
GLMIGEKTIEVNAEGITETNPLGNCFYRWKAIEAIEEYEGSIYIFVDNLLALILPPESFT
CEEEECEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCEEEEEECCCCCC
SEEEKDQFKGLIKKYV
CHHHHHHHHHHHHHCC
>Mature Secondary Structure
MILWFFLAIGFMFIFQVKATTFESFHWQSAAIAIAPFLIFIVAYYLNVRKFKMLCIPNEN
CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCC
GLMIGEKTIEVNAEGITETNPLGNCFYRWKAIEAIEEYEGSIYIFVDNLLALILPPESFT
CEEEECEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCEEEEEECCCCCC
SEEEKDQFKGLIKKYV
CHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA