| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774481
Identifier: 119774481
GI number: 119774481
Start: 1636239
End: 1636631
Strand: Reverse
Name: 119774481
Synonym: Sama_1344
Alternate gene names: NA
Gene position: 1636631-1636239 (Counterclockwise)
Preceding gene: 119774482
Following gene: 119774480
Centisome position: 38.01
GC content: 38.68
Gene sequence:
>393_bases GTGAACTGGGCACGAATTGCTAAATACACATTCTTCTACTTTATCTGTTCCGTAGCTTCAGGCGTGCCATTGGGCTATGT AATGGGGCGCTATGATTCAACTGGTGAAATGATTCCGAGCTCAATTTACTGGAGCTTTATTTTCCTTTCTATGGTTGTTG AGGCAACGATCATTTATTTTCTAGTGAAGAACCAGAAAAAATTAGCTTTTATACATGCACTTATAGTTGTTTTGTTCAGC TCTTTAATTGCGTCATGTATTCTGTATTTGTTGACTGGCGAGGTTCTTTTGGACGGCTGGCAAATTGATTATGTATGTAT GTTTATTGCGCTTTTGTTTGGTGTTGCCTTAGGCAAGCATGCAACAAAAAGTTCAGGTGTTGTAAATGCCTAA
Upstream 100 bases:
>100_bases GCCCCTAACAAGCGCCATCAAAAACGCGCCCTTTGGGCGCTCGACTCGCAACACGTTGCTCGCGTTTGTGGCGGGCGTTA GGCATTTAAAAGGACGTTAA
Downstream 100 bases:
>100_bases CAAGCGCCATCAAAAACGCGCCCGTTGGGCGCTCGACTCGCAACAAGTTGCTCGCCTTTGCTGCGGGCGTTAGGCTTTGA ATGGAATCAGATTATGAATC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 130; Mature: 130
Protein sequence:
>130_residues MNWARIAKYTFFYFICSVASGVPLGYVMGRYDSTGEMIPSSIYWSFIFLSMVVEATIIYFLVKNQKKLAFIHALIVVLFS SLIASCILYLLTGEVLLDGWQIDYVCMFIALLFGVALGKHATKSSGVVNA
Sequences:
>Translated_130_residues MNWARIAKYTFFYFICSVASGVPLGYVMGRYDSTGEMIPSSIYWSFIFLSMVVEATIIYFLVKNQKKLAFIHALIVVLFS SLIASCILYLLTGEVLLDGWQIDYVCMFIALLFGVALGKHATKSSGVVNA >Mature_130_residues MNWARIAKYTFFYFICSVASGVPLGYVMGRYDSTGEMIPSSIYWSFIFLSMVVEATIIYFLVKNQKKLAFIHALIVVLFS SLIASCILYLLTGEVLLDGWQIDYVCMFIALLFGVALGKHATKSSGVVNA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14503; Mature: 14503
Theoretical pI: Translated: 8.45; Mature: 8.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNWARIAKYTFFYFICSVASGVPLGYVMGRYDSTGEMIPSSIYWSFIFLSMVVEATIIYF CCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH LVKNQKKLAFIHALIVVLFSSLIASCILYLLTGEVLLDGWQIDYVCMFIALLFGVALGKH HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC ATKSSGVVNA CCCCCCCCCC >Mature Secondary Structure MNWARIAKYTFFYFICSVASGVPLGYVMGRYDSTGEMIPSSIYWSFIFLSMVVEATIIYF CCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH LVKNQKKLAFIHALIVVLFSSLIASCILYLLTGEVLLDGWQIDYVCMFIALLFGVALGKH HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC ATKSSGVVNA CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA