| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is rimK [C]
Identifier: 119774294
GI number: 119774294
Start: 1410321
End: 1411772
Strand: Direct
Name: rimK [C]
Synonym: Sama_1157
Alternate gene names: 119774294
Gene position: 1410321-1411772 (Clockwise)
Preceding gene: 119774292
Following gene: 119774296
Centisome position: 32.75
GC content: 51.86
Gene sequence:
>1452_bases ATGGCGCAGCTGTTGATAGTGACGGATAACAAGGAGGACTGGCGCCCCTATCTGCCCAGCGAGCAGATGGTGACGGTGAA TGAGTATCTGGCCATGGGGGCCTGGGGCAACAGCAAGAATGTGCAGGTATTGAACCTGTGCCGCAACTACGACTACCTCT CCAACGGCTATTATTGCTCGCTGCTGGCCGAAGCCCGTGGCCACAGGGTCTTGCCCAGAGTCATGACCATCAATGACTTG TCTCAGGACCGTTTTTTCAGCCTGCCTCAGGGCGGACTTGAAAAACTGAGTGCCGATCTGGCCGAACTCAGCTTCAAGCT GTTTTTTGGTTACTGCGATATTCCCGCCCTCGAGCGCATTGGTCGCAAAATATTTGAACGTTTTACCGTGCCTGTGCTGG AAGTGAAGCTGGTGAAGTTACAGGAAAAGTGGCAGGTCGACAGTATTCAGCCATTTCCCTATCAGGCGTTGAATGATGCT GAACAAGATGCCTTTGCCAACTCCCTGGAAGTGTTTTCACAGAAGGTGTGGCGTAAGCCCCGGCGTTCACGCAAGTTTCG TTACGAGATGGCAATGCTGGTGGATGAGCGGGAAAAAATGCCTCCATCAAACAAAGGGGCATTGAACCGCTTTATCAAGG CCGCAAACCGCTTGGGGATGGAGCTTGAGTTGATTGGGCCACATGAACTCACAAGGCTCGGGGAGTTTGACGGCCTCTTT ATTCGCTCCACCACGAATATCAGTAACTTTACCTACCGTTTCGCCAAAAGCGCCGAGCAGCTGGGACTTATTGTGATGGA TGATCCCGAGTCTATCATGAAGTGTACCAACAAGGTATTTTTATCCGAGCTTTTGGCCAGCCACAAGGTTCCTGCACCAA AGAGCATGATTTTTAAAGCATCCGATGAAGGCTGGCAGGATACGCTCATCGCCGAAATCGGCTTGCCAGCGGTACTTAAG GTACCGGATGGCGCCTTTTCCCTGGGGGTAGTCAAGGTGAAAGAGCGGGCACAGCTGGAAGCAGAGGCGATGCGTATCTT CCAGCACAGCAGTTTAATCCTGGCCCAGGAATACCTGCCGACCGAATTTGATTGGCGTATTGGGGTACTTAACCGCCAGC CAATCTACGCCTGCCGTTACTATATGAGCCGTGGTCACTGGCAAATTTACCAGCACCACAAGAGTGGGCGAGTAAGCAGC GGCGGTTTCGATGCTATGGATATGAAGTCGGTCCCCGGTCAGGTGGTGGATGCCGCCGTCAAGGCGGCCAATTTAATCGG CAGTGGTTTTTACGGTGTCGACCTGAAAGAAGTCAATGGCAAAGCCTATGTGATTGAAGTAAATGACAACCCCAGCGTTG ATCACGGTGTGGAAGATAAATACCTTGGAGACTTGCTTTACGACAGGGTGATGACCGAATTTCTGCGGCGTATTCAGTTA CGGGGTTTTTAA
Upstream 100 bases:
>100_bases GAGTTGGGCTAGGCTCGCGAGGCGATATTCCATGGTGATGGCCATCCACAATAGGATAGGCTCATTAAATCCAGTTCAGT GACAGGAGGCAAGTTCAATT
Downstream 100 bases:
>100_bases ATCAACTGGAAGGAGACTCTTGCCCATCCCTGGGCGACCACTGTCAATTTATTGTCAGCCTTTGACAGGGTGTTGAAGAC TGAGGCGATAGCAATTGCGG
Product: glutathione synthase
Products: NA
Alternate protein names: Glutathione Synthase/Ribosomal; RimK Domain Protein ATP-Grasp; Glutathione Synthase; Ribosomal Protein-Related Protein; RimK-Like ATP-Grasp Domain Family; Alpha-L-Glutamate Ligase Family Protein; RimK-Like ATP-Grasp; 30S Ribosomal Protein-Related Protein; Ribosomal Protein-Like Protein; GCN5-Related N-Acetyltransferase; Rimk Domain Protein ATP-Grasp; Ribosomal Protein; Fused RimK-Like Domain/ Domain-Containing Protein; RimK Domain-Containing Protein; Glutathione Synthase/Ribosomal Glutaminyl Transferase; 30S Ribosomal Protein; Ribosomal -Glutamic Acid Ligase
Number of amino acids: Translated: 483; Mature: 482
Protein sequence:
>483_residues MAQLLIVTDNKEDWRPYLPSEQMVTVNEYLAMGAWGNSKNVQVLNLCRNYDYLSNGYYCSLLAEARGHRVLPRVMTINDL SQDRFFSLPQGGLEKLSADLAELSFKLFFGYCDIPALERIGRKIFERFTVPVLEVKLVKLQEKWQVDSIQPFPYQALNDA EQDAFANSLEVFSQKVWRKPRRSRKFRYEMAMLVDEREKMPPSNKGALNRFIKAANRLGMELELIGPHELTRLGEFDGLF IRSTTNISNFTYRFAKSAEQLGLIVMDDPESIMKCTNKVFLSELLASHKVPAPKSMIFKASDEGWQDTLIAEIGLPAVLK VPDGAFSLGVVKVKERAQLEAEAMRIFQHSSLILAQEYLPTEFDWRIGVLNRQPIYACRYYMSRGHWQIYQHHKSGRVSS GGFDAMDMKSVPGQVVDAAVKAANLIGSGFYGVDLKEVNGKAYVIEVNDNPSVDHGVEDKYLGDLLYDRVMTEFLRRIQL RGF
Sequences:
>Translated_483_residues MAQLLIVTDNKEDWRPYLPSEQMVTVNEYLAMGAWGNSKNVQVLNLCRNYDYLSNGYYCSLLAEARGHRVLPRVMTINDL SQDRFFSLPQGGLEKLSADLAELSFKLFFGYCDIPALERIGRKIFERFTVPVLEVKLVKLQEKWQVDSIQPFPYQALNDA EQDAFANSLEVFSQKVWRKPRRSRKFRYEMAMLVDEREKMPPSNKGALNRFIKAANRLGMELELIGPHELTRLGEFDGLF IRSTTNISNFTYRFAKSAEQLGLIVMDDPESIMKCTNKVFLSELLASHKVPAPKSMIFKASDEGWQDTLIAEIGLPAVLK VPDGAFSLGVVKVKERAQLEAEAMRIFQHSSLILAQEYLPTEFDWRIGVLNRQPIYACRYYMSRGHWQIYQHHKSGRVSS GGFDAMDMKSVPGQVVDAAVKAANLIGSGFYGVDLKEVNGKAYVIEVNDNPSVDHGVEDKYLGDLLYDRVMTEFLRRIQL RGF >Mature_482_residues AQLLIVTDNKEDWRPYLPSEQMVTVNEYLAMGAWGNSKNVQVLNLCRNYDYLSNGYYCSLLAEARGHRVLPRVMTINDLS QDRFFSLPQGGLEKLSADLAELSFKLFFGYCDIPALERIGRKIFERFTVPVLEVKLVKLQEKWQVDSIQPFPYQALNDAE QDAFANSLEVFSQKVWRKPRRSRKFRYEMAMLVDEREKMPPSNKGALNRFIKAANRLGMELELIGPHELTRLGEFDGLFI RSTTNISNFTYRFAKSAEQLGLIVMDDPESIMKCTNKVFLSELLASHKVPAPKSMIFKASDEGWQDTLIAEIGLPAVLKV PDGAFSLGVVKVKERAQLEAEAMRIFQHSSLILAQEYLPTEFDWRIGVLNRQPIYACRYYMSRGHWQIYQHHKSGRVSSG GFDAMDMKSVPGQVVDAAVKAANLIGSGFYGVDLKEVNGKAYVIEVNDNPSVDHGVEDKYLGDLLYDRVMTEFLRRIQLR GF
Specific function: Responsible For The Addition Of Glutamate Residues To The C-Terminus Of Ribosomal Protein S6. [C]
COG id: COG0189
COG function: function code HJ; Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55092; Mature: 54961
Theoretical pI: Translated: 7.56; Mature: 7.56
Prosite motif: PS50975 ATP_GRASP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQLLIVTDNKEDWRPYLPSEQMVTVNEYLAMGAWGNSKNVQVLNLCRNYDYLSNGYYCS CCEEEEEECCCCCCCCCCCCCCEEEHHHHHEECCCCCCCCEEEEEHHHCCCCCCCCEEEE LLAEARGHRVLPRVMTINDLSQDRFFSLPQGGLEKLSADLAELSFKLFFGYCDIPALERI EEECCCCCCCCCCEEEECCCCCCCEECCCCHHHHHHHHHHHHHHHHHEEECCCCHHHHHH GRKIFERFTVPVLEVKLVKLQEKWQVDSIQPFPYQALNDAEQDAFANSLEVFSQKVWRKP HHHHHHHHCCCHHHHEEEHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCH RRSRKFRYEMAMLVDEREKMPPSNKGALNRFIKAANRLGMELELIGPHELTRLGEFDGLF HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCEE IRSTTNISNFTYRFAKSAEQLGLIVMDDPESIMKCTNKVFLSELLASHKVPAPKSMIFKA EEEECCCCHHHHHHHCCHHHCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEC SDEGWQDTLIAEIGLPAVLKVPDGAFSLGVVKVKERAQLEAEAMRIFQHSSLILAQEYLP CCCCCHHHHHHHCCCCEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHCCCEEEHHHCC TEFDWRIGVLNRQPIYACRYYMSRGHWQIYQHHKSGRVSSGGFDAMDMKSVPGQVVDAAV CCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH KAANLIGSGFYGVDLKEVNGKAYVIEVNDNPSVDHGVEDKYLGDLLYDRVMTEFLRRIQL HHHHHHCCCCCCCEEEECCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC RGF CCC >Mature Secondary Structure AQLLIVTDNKEDWRPYLPSEQMVTVNEYLAMGAWGNSKNVQVLNLCRNYDYLSNGYYCS CEEEEEECCCCCCCCCCCCCCEEEHHHHHEECCCCCCCCEEEEEHHHCCCCCCCCEEEE LLAEARGHRVLPRVMTINDLSQDRFFSLPQGGLEKLSADLAELSFKLFFGYCDIPALERI EEECCCCCCCCCCEEEECCCCCCCEECCCCHHHHHHHHHHHHHHHHHEEECCCCHHHHHH GRKIFERFTVPVLEVKLVKLQEKWQVDSIQPFPYQALNDAEQDAFANSLEVFSQKVWRKP HHHHHHHHCCCHHHHEEEHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCH RRSRKFRYEMAMLVDEREKMPPSNKGALNRFIKAANRLGMELELIGPHELTRLGEFDGLF HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCEE IRSTTNISNFTYRFAKSAEQLGLIVMDDPESIMKCTNKVFLSELLASHKVPAPKSMIFKA EEEECCCCHHHHHHHCCHHHCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEC SDEGWQDTLIAEIGLPAVLKVPDGAFSLGVVKVKERAQLEAEAMRIFQHSSLILAQEYLP CCCCCHHHHHHHCCCCEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHCCCEEEHHHCC TEFDWRIGVLNRQPIYACRYYMSRGHWQIYQHHKSGRVSSGGFDAMDMKSVPGQVVDAAV CCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH KAANLIGSGFYGVDLKEVNGKAYVIEVNDNPSVDHGVEDKYLGDLLYDRVMTEFLRRIQL HHHHHHCCCCCCCEEEECCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC RGF CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Glu; Ribosomal protein S6 [C]
Specific reaction: Catalyzes the addition of glutamic acids to the carboxyl end of ribosomal protein S6 [C]
General reaction: Ligases; Forming Carbon-Nitrogen Bonds; Acid-D-Amino-Acid Ligases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA