| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is fabZ
Identifier: 119774287
GI number: 119774287
Start: 1400901
End: 1401362
Strand: Direct
Name: fabZ
Synonym: Sama_1150
Alternate gene names: 119774287
Gene position: 1400901-1401362 (Clockwise)
Preceding gene: 119774286
Following gene: 119774288
Centisome position: 32.53
GC content: 49.35
Gene sequence:
>462_bases GTGTCTAATCAAATGAACACCATGGATATCAAAGAGATACTTAAGTATCTGCCCCACAGATATCCGTTTCTGCTCATAGA CCGTGTGCTGGACTTCACCGCTGGTGAATCTTTGCACGCCATCAAAAACGTCACCATCAACGAGCCATTTTTTGTGGGGC ATTTCCCTGTCGCTCCCGTGATGCCTGGCGTATTGATCCTTGAAGCTATGGCCCAGGCAACTGGCCTTCTGGCATTCAAG ACCATGAGCAGCGAGCCATCGCCAGATGTGCTTTATTATTTTGCCGGTATCGACAATGCTCGTTTTAAACGTGTTGTTGA GCCGGGCGACCAGCTGCACTTTGAAGTGAAAATGATTAAGGAACGCCGCGGGATTGGTGTGTTCTATGGTGAGGCCAAAG TGGATGGTGAGCTGGTTTGCAGCGCAGAAATCATGTGTGCCCGCAGAGAGATTAGCAAGTGA
Upstream 100 bases:
>100_bases ATGAGCTTTTCCAGCGCGTAAAGGTGCTGGAAGGCAAACAGCAAGAAGAAAAGTAACGCACAGCCGCTTGCGAGCCAGTG CATCCTGAGGAACAAAATTC
Downstream 100 bases:
>100_bases TCAGTGAATTAGCTTTCGTCCATCCCGACGCGAAAATTGGCAACAACGTGACCATTGGCCCCTGGAGCTATATTGGCCCG GGTGTCGAAATTGGTGACGA
Product: (3R)-hydroxymyristoyl-ACP dehydratase
Products: NA
Alternate protein names: (3R)-hydroxymyristoyl ACP dehydrase
Number of amino acids: Translated: 153; Mature: 152
Protein sequence:
>153_residues MSNQMNTMDIKEILKYLPHRYPFLLIDRVLDFTAGESLHAIKNVTINEPFFVGHFPVAPVMPGVLILEAMAQATGLLAFK TMSSEPSPDVLYYFAGIDNARFKRVVEPGDQLHFEVKMIKERRGIGVFYGEAKVDGELVCSAEIMCARREISK
Sequences:
>Translated_153_residues MSNQMNTMDIKEILKYLPHRYPFLLIDRVLDFTAGESLHAIKNVTINEPFFVGHFPVAPVMPGVLILEAMAQATGLLAFK TMSSEPSPDVLYYFAGIDNARFKRVVEPGDQLHFEVKMIKERRGIGVFYGEAKVDGELVCSAEIMCARREISK >Mature_152_residues SNQMNTMDIKEILKYLPHRYPFLLIDRVLDFTAGESLHAIKNVTINEPFFVGHFPVAPVMPGVLILEAMAQATGLLAFKT MSSEPSPDVLYYFAGIDNARFKRVVEPGDQLHFEVKMIKERRGIGVFYGEAKVDGELVCSAEIMCARREISK
Specific function: Involved in saturated fatty acids biosynthesis
COG id: COG0764
COG function: function code I; 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the thioester dehydratase family. FabZ subfamily
Homologues:
Organism=Escherichia coli, GI1786377, Length=148, Percent_Identity=62.1621621621622, Blast_Score=188, Evalue=1e-49,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): FABZ_SHEAM (A1S4Q1)
Other databases:
- EMBL: CP000507 - RefSeq: YP_927027.1 - ProteinModelPortal: A1S4Q1 - SMR: A1S4Q1 - STRING: A1S4Q1 - GeneID: 4603402 - GenomeReviews: CP000507_GR - KEGG: saz:Sama_1150 - NMPDR: fig|326297.7.peg.1082 - eggNOG: COG0764 - HOGENOM: HBG433282 - OMA: KERRGVA - PhylomeDB: A1S4Q1 - ProtClustDB: PRK00006 - GO: GO:0005737 - HAMAP: MF_00406 - InterPro: IPR013114 - InterPro: IPR010084 - TIGRFAMs: TIGR01750
Pfam domain/function: PF07977 FabA
EC number: 4.2.1.-
Molecular weight: Translated: 17240; Mature: 17109
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: ACT_SITE 54-54
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNQMNTMDIKEILKYLPHRYPFLLIDRVLDFTAGESLHAIKNVTINEPFFVGHFPVAPV CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEECCCHHHH MPGVLILEAMAQATGLLAFKTMSSEPSPDVLYYFAGIDNARFKRVVEPGDQLHFEVKMIK HHHHHHHHHHHHHHHHEEEEECCCCCCCCEEEEEECCCCHHHHHHCCCCCCEEEHHEEEH ERRGIGVFYGEAKVDGELVCSAEIMCARREISK HHCCCEEEECCCCCCCEEEEHHHHHHHHHHCCC >Mature Secondary Structure SNQMNTMDIKEILKYLPHRYPFLLIDRVLDFTAGESLHAIKNVTINEPFFVGHFPVAPV CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEECCCHHHH MPGVLILEAMAQATGLLAFKTMSSEPSPDVLYYFAGIDNARFKRVVEPGDQLHFEVKMIK HHHHHHHHHHHHHHHHEEEEECCCCCCCCEEEEEECCCCHHHHHHCCCCCCEEEHHEEEH ERRGIGVFYGEAKVDGELVCSAEIMCARREISK HHCCCEEEECCCCCCCEEEEHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Carbon-Oxygen Lyases; Hydro-Lyases [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA