| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774231
Identifier: 119774231
GI number: 119774231
Start: 1320269
End: 1321003
Strand: Direct
Name: 119774231
Synonym: Sama_1094
Alternate gene names: NA
Gene position: 1320269-1321003 (Clockwise)
Preceding gene: 119774230
Following gene: 119774233
Centisome position: 30.66
GC content: 54.29
Gene sequence:
>735_bases ATGGTCAGGCGCTTTCTCTTTGCGACATTGTCCTTATGTGCTTTCGTTGCCTCGGCAGGGCAGCTGCGAGCCTGTATCGA TGAGTTTCCCCCTTATCAAAGCCTGATGCCTGAACCCCATGGGAATAACATTGCCGCATTGAGGCTGTTTGCCAAACTGA TAGACCATGATCCTGTGTTCTTGCCCAGCCCGAACTTTGCCCGCTGTCAGCGCATGCTGGACATGGGGGATGCCGATATT GTTGCGGGTGTCATTGCCAGTCCGGAGCGGCAGCAGCGATGGATACTTTTGCCCTACCGCCGGGATAGCCGTTACCTTTT TCTGACCAGGCCCGGCGGCGTCACCGTGAGCCGCTATGATAATTTACTGGGGCACAGTATCGCTGTAAGTCGTAACACCA TGTATTTTGATTACTTTGATAATGACAGTCGTTTGAAAAAACAGGTGGTCGGTGACCTGGTCACGGGGGTGAGAATGTTG CTGGCAGACAGGGTTGATGTGGTGATAGCCCCGGAAAATGCCCTGCCGTTCCTGAGCCGTGAGTTCTCAAACTTTGCCCA TGCAGTGCAGGTATCAGAGTACCGATATCAGGAGGACCGGGTTATCCAGTTTGCTTTAAGCCGACAACACCGCCTGGATA TCGATGAGCAAAGGCTGCGGCGGGTGATTACCGAGGCCTTTGAGCAATCCTTGTTTGAGTCGGCGCTGCAGGCCATGCCC GCCAGCGCCCAGTAG
Upstream 100 bases:
>100_bases GCCCACTGAGCTATATCCTTCAAGCTTTTAGCCTGACATGACTTGGGCAGCGCCCTAAAATACGTAATACTTTCGAATAG TGTATTCAGTCGGAGCTGCC
Downstream 100 bases:
>100_bases CTTGATGTCAGTTCGCCTTGTGGTGGGCTCTAAATAAATCCCAGGCGTTTTTTTGGGTACCATCGGCAAGCTCACACAAT CCTGTATCACCCTCCGCTTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 244; Mature: 244
Protein sequence:
>244_residues MVRRFLFATLSLCAFVASAGQLRACIDEFPPYQSLMPEPHGNNIAALRLFAKLIDHDPVFLPSPNFARCQRMLDMGDADI VAGVIASPERQQRWILLPYRRDSRYLFLTRPGGVTVSRYDNLLGHSIAVSRNTMYFDYFDNDSRLKKQVVGDLVTGVRML LADRVDVVIAPENALPFLSREFSNFAHAVQVSEYRYQEDRVIQFALSRQHRLDIDEQRLRRVITEAFEQSLFESALQAMP ASAQ
Sequences:
>Translated_244_residues MVRRFLFATLSLCAFVASAGQLRACIDEFPPYQSLMPEPHGNNIAALRLFAKLIDHDPVFLPSPNFARCQRMLDMGDADI VAGVIASPERQQRWILLPYRRDSRYLFLTRPGGVTVSRYDNLLGHSIAVSRNTMYFDYFDNDSRLKKQVVGDLVTGVRML LADRVDVVIAPENALPFLSREFSNFAHAVQVSEYRYQEDRVIQFALSRQHRLDIDEQRLRRVITEAFEQSLFESALQAMP ASAQ >Mature_244_residues MVRRFLFATLSLCAFVASAGQLRACIDEFPPYQSLMPEPHGNNIAALRLFAKLIDHDPVFLPSPNFARCQRMLDMGDADI VAGVIASPERQQRWILLPYRRDSRYLFLTRPGGVTVSRYDNLLGHSIAVSRNTMYFDYFDNDSRLKKQVVGDLVTGVRML LADRVDVVIAPENALPFLSREFSNFAHAVQVSEYRYQEDRVIQFALSRQHRLDIDEQRLRRVITEAFEQSLFESALQAMP ASAQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27903; Mature: 27903
Theoretical pI: Translated: 7.56; Mature: 7.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVRRFLFATLSLCAFVASAGQLRACIDEFPPYQSLMPEPHGNNIAALRLFAKLIDHDPVF CHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCEE LPSPNFARCQRMLDMGDADIVAGVIASPERQQRWILLPYRRDSRYLFLTRPGGVTVSRYD CCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEECCCCEEHHHHH NLLGHSIAVSRNTMYFDYFDNDSRLKKQVVGDLVTGVRMLLADRVDVVIAPENALPFLSR HHHHCEEEEECCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHH EFSNFAHAVQVSEYRYQEDRVIQFALSRQHRLDIDEQRLRRVITEAFEQSLFESALQAMP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC ASAQ CCCC >Mature Secondary Structure MVRRFLFATLSLCAFVASAGQLRACIDEFPPYQSLMPEPHGNNIAALRLFAKLIDHDPVF CHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCEE LPSPNFARCQRMLDMGDADIVAGVIASPERQQRWILLPYRRDSRYLFLTRPGGVTVSRYD CCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEECCCCEEHHHHH NLLGHSIAVSRNTMYFDYFDNDSRLKKQVVGDLVTGVRMLLADRVDVVIAPENALPFLSR HHHHCEEEEECCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHH EFSNFAHAVQVSEYRYQEDRVIQFALSRQHRLDIDEQRLRRVITEAFEQSLFESALQAMP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC ASAQ CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA