| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is relA [H]
Identifier: 119774170
GI number: 119774170
Start: 1250012
End: 1252216
Strand: Direct
Name: relA [H]
Synonym: Sama_1033
Alternate gene names: 119774170
Gene position: 1250012-1252216 (Clockwise)
Preceding gene: 119774169
Following gene: 119774171
Centisome position: 29.03
GC content: 54.2
Gene sequence:
>2205_bases ATGGTGTCTGTCCGCGAAGCACATTTCAACGATGTCGATTTCAATCTGGAAGACTGGGTGGTTCGGTATGTAGACGACGC CGAGGATGCCAGGGTGCTGCTAGAGCTGCTGCGCACCGTTCAGGCGATGCCGATGAAGGATGCCAAGGCCCATGATGCCC TGATGTCCCGTGCCAGAGAGATGATTGAAATTCTGGCACCGCTGAATATGGACCTTGAGACCCTGCAGGCGGCCGTACTG TTTTCGGTGCAGGAAGCGGGGCTCTTACCCCAGGAAAAACTGGTCGAAAAGTTTGGTGACAAGCTGGGTAATCTTGTGGC CAGCGTCGTTACCATGAATGCCATCGGCAGCCTGAAACTCAGTGAACAGTCGCGTTCCGCTGAAATGCAAATCGACAACA TCCGTAAAATGCTGCTGGCCATGGTGGAAGATGTGCGCGCCGTGGTGATTAAGCTTGCCGAGCGCGTGTGTCTGCTGCGG GCAGTAAAAAATGCCGATGAAGAAACCCGGGTGTTGCTGGCCCGTGAAATCGCCGATATCTATGCGCCGTTGGCAAACCG TTTGGGCATTGGCCAGCTCAAGTGGGAGCTTGAGGACATTTCCTTCCGCTATCTGCATCCTGAAACCTACAAAGAAATCG CCAAACAGCTCGACGGAAAGCGCATCGATCGCGAAACCTATATAGAGCAGTTTGTGAATGACCTGCAGGCCAAGCTCGAT GAAGAGCATATTCGCGCCAAGGTTTATGGTCGCCCAAAACACATCTACTCCATCTGGCGCAAGATGAAGGGCAAACACCT CAAGTTTGATGAGCTGTTTGATGTACGCGCTGTGCGTATCGTCACCGACCGTTTGCAGGACTGTTACGGGGCCTTGGGCG TGGTGCACACCCTCTATCATCATATTCCCCGGGAGTTTGATGACTATGTCGCCAACCCCAAACCCAACGGCTATCAGTCC ATTCACACTATTGTGGTGGGGCCAGAAGGCAAAACCGTTGAAATTCAAATTCGTACCGAAGCCATGCATCAGGACGCCGA GCTGGGTGTGGCTGCACACTGGAAATATAAAGAGGGTCATGCTGGCAAGCAGAGCGGTTACGAAGAGAAAATCAACTGGC TGCGCAAAATCCTGCAGTGGCAGGAAGATGTGGTGGAAAGTGGCAACCTGGTGGAAGAAATCCGCAGCCAGGTGTTCGAG GACAGGGTGTATGTATTTACCCCGTCCGGTGAAGTGGTAGATTTGCCCGCCGGCAGTACCGTGCTCGACTTTGCCTATTA CATCCACTCTCAGGTTGGCCACAAGTGTATTGGCGCCAAGGTGGATGGCCGCATCGTGCCCTTCACTTATCAGGTGGAAA CCGGTGAGCGGATTGAAATTATCACCTCCAAGCACCCCAATCCCAAGCGCGATTGGCTGAATCCCAACCTGGGCTACATC AAGACCTCCAGGGCCCGCAGCAAAATCCAGCATTGGTTCAAGCAGCAGGACAGGGACAAAAACCTGGCGGCCGGCCGCGA GATGCTGGAAGTCGAACTTGGCCGGGTGGGTCTGACGTTAAAAGACGCCGCCAGCGCCATAGAGCGCTTTAACATGACCA ATATGGACGACCTCTTGGCGGCCATCGGCGGTGGCGATGTGCGTCTCAATCAGGTGGTTAACCATATTCAGAGTCGGATG CGGGTGCATGAGATCTCCGACGAAGAAGCCGTGGAAGATCTGGTCAAGAAAGGCCAGCACAAGCCCATTGCCAAGACCCG GGATCAAATTGAAGTAAACGGCGTCGGGAACCTCTTAAGCCATATTGCCCAGTGCTGCCGCCCTGTGCCCGGTGATGAAA TTTTCGGTTTTATTACCAAGGGACGCGGTATTTCAGTGCATCGAGCCGACTGTGAGCAGGTGAAAGAACTGATGCGCGCC CATCCAGAGCGGGTGGTGGATGTAGTTTGGGGCGAAAACTATTCCGGTGGCTACAAAATCCGTCTGCGGGTACTCGCCAA CGACAGAACCGGATTGCTGCGGGATTTAACCTCGGTGCTGGCGGCGGAAAAATCCAATGTGCTTGCCATGAGCAGCTCAT CGGATATCAAAAACCAGACCGCTGCCATTGAGCTTGAGCTCGAACTTTACAACGTAGATGGCCTCTCGAGGGTGCTGTCC AAGCTCGGTCAGGTGGATGGCGTGATTGAGGCTCGCCGCCTCTAA
Upstream 100 bases:
>100_bases TGGACAATCGGCCCGCTTGGGTTTGACAAGCGCGTGCCAATCCTGAAGATAAAGTCTTTAACTTGTTTGGCCCAGAGTGG GAAGAGGGATCCTTAAGCCT
Downstream 100 bases:
>100_bases CGCCTGTTAACTGATGAATACTGAACCTTTCAAATAAGGGCTGCGTTGCAGCCTTTGTTTTTAACGTCTTTTAAGTCATA GCTGCGCTGTTTTCGCAGCA
Product: GTP diphosphokinase
Products: NA
Alternate protein names: (p)ppGpp synthase; ATP:GTP 3'-pyrophosphotransferase; ppGpp synthase I [H]
Number of amino acids: Translated: 734; Mature: 734
Protein sequence:
>734_residues MVSVREAHFNDVDFNLEDWVVRYVDDAEDARVLLELLRTVQAMPMKDAKAHDALMSRAREMIEILAPLNMDLETLQAAVL FSVQEAGLLPQEKLVEKFGDKLGNLVASVVTMNAIGSLKLSEQSRSAEMQIDNIRKMLLAMVEDVRAVVIKLAERVCLLR AVKNADEETRVLLAREIADIYAPLANRLGIGQLKWELEDISFRYLHPETYKEIAKQLDGKRIDRETYIEQFVNDLQAKLD EEHIRAKVYGRPKHIYSIWRKMKGKHLKFDELFDVRAVRIVTDRLQDCYGALGVVHTLYHHIPREFDDYVANPKPNGYQS IHTIVVGPEGKTVEIQIRTEAMHQDAELGVAAHWKYKEGHAGKQSGYEEKINWLRKILQWQEDVVESGNLVEEIRSQVFE DRVYVFTPSGEVVDLPAGSTVLDFAYYIHSQVGHKCIGAKVDGRIVPFTYQVETGERIEIITSKHPNPKRDWLNPNLGYI KTSRARSKIQHWFKQQDRDKNLAAGREMLEVELGRVGLTLKDAASAIERFNMTNMDDLLAAIGGGDVRLNQVVNHIQSRM RVHEISDEEAVEDLVKKGQHKPIAKTRDQIEVNGVGNLLSHIAQCCRPVPGDEIFGFITKGRGISVHRADCEQVKELMRA HPERVVDVVWGENYSGGYKIRLRVLANDRTGLLRDLTSVLAAEKSNVLAMSSSSDIKNQTAAIELELELYNVDGLSRVLS KLGQVDGVIEARRL
Sequences:
>Translated_734_residues MVSVREAHFNDVDFNLEDWVVRYVDDAEDARVLLELLRTVQAMPMKDAKAHDALMSRAREMIEILAPLNMDLETLQAAVL FSVQEAGLLPQEKLVEKFGDKLGNLVASVVTMNAIGSLKLSEQSRSAEMQIDNIRKMLLAMVEDVRAVVIKLAERVCLLR AVKNADEETRVLLAREIADIYAPLANRLGIGQLKWELEDISFRYLHPETYKEIAKQLDGKRIDRETYIEQFVNDLQAKLD EEHIRAKVYGRPKHIYSIWRKMKGKHLKFDELFDVRAVRIVTDRLQDCYGALGVVHTLYHHIPREFDDYVANPKPNGYQS IHTIVVGPEGKTVEIQIRTEAMHQDAELGVAAHWKYKEGHAGKQSGYEEKINWLRKILQWQEDVVESGNLVEEIRSQVFE DRVYVFTPSGEVVDLPAGSTVLDFAYYIHSQVGHKCIGAKVDGRIVPFTYQVETGERIEIITSKHPNPKRDWLNPNLGYI KTSRARSKIQHWFKQQDRDKNLAAGREMLEVELGRVGLTLKDAASAIERFNMTNMDDLLAAIGGGDVRLNQVVNHIQSRM RVHEISDEEAVEDLVKKGQHKPIAKTRDQIEVNGVGNLLSHIAQCCRPVPGDEIFGFITKGRGISVHRADCEQVKELMRA HPERVVDVVWGENYSGGYKIRLRVLANDRTGLLRDLTSVLAAEKSNVLAMSSSSDIKNQTAAIELELELYNVDGLSRVLS KLGQVDGVIEARRL >Mature_734_residues MVSVREAHFNDVDFNLEDWVVRYVDDAEDARVLLELLRTVQAMPMKDAKAHDALMSRAREMIEILAPLNMDLETLQAAVL FSVQEAGLLPQEKLVEKFGDKLGNLVASVVTMNAIGSLKLSEQSRSAEMQIDNIRKMLLAMVEDVRAVVIKLAERVCLLR AVKNADEETRVLLAREIADIYAPLANRLGIGQLKWELEDISFRYLHPETYKEIAKQLDGKRIDRETYIEQFVNDLQAKLD EEHIRAKVYGRPKHIYSIWRKMKGKHLKFDELFDVRAVRIVTDRLQDCYGALGVVHTLYHHIPREFDDYVANPKPNGYQS IHTIVVGPEGKTVEIQIRTEAMHQDAELGVAAHWKYKEGHAGKQSGYEEKINWLRKILQWQEDVVESGNLVEEIRSQVFE DRVYVFTPSGEVVDLPAGSTVLDFAYYIHSQVGHKCIGAKVDGRIVPFTYQVETGERIEIITSKHPNPKRDWLNPNLGYI KTSRARSKIQHWFKQQDRDKNLAAGREMLEVELGRVGLTLKDAASAIERFNMTNMDDLLAAIGGGDVRLNQVVNHIQSRM RVHEISDEEAVEDLVKKGQHKPIAKTRDQIEVNGVGNLLSHIAQCCRPVPGDEIFGFITKGRGISVHRADCEQVKELMRA HPERVVDVVWGENYSGGYKIRLRVLANDRTGLLRDLTSVLAAEKSNVLAMSSSSDIKNQTAAIELELELYNVDGLSRVLS KLGQVDGVIEARRL
Specific function: In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. This enzyme catalyzes the formation of pppGpp which i
COG id: COG0317
COG function: function code TK; Guanosine polyphosphate pyrophosphohydrolases/synthetases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ACT domain [H]
Homologues:
Organism=Escherichia coli, GI1789147, Length=745, Percent_Identity=59.0604026845638, Blast_Score=892, Evalue=0.0, Organism=Escherichia coli, GI1790082, Length=633, Percent_Identity=33.9652448657188, Blast_Score=411, Evalue=1e-116,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR012675 - InterPro: IPR007685 - InterPro: IPR004811 - InterPro: IPR004095 - InterPro: IPR012676 [H]
Pfam domain/function: PF01842 ACT; PF04607 RelA_SpoT; PF02824 TGS [H]
EC number: =2.7.6.5 [H]
Molecular weight: Translated: 83225; Mature: 83225
Theoretical pI: Translated: 6.49; Mature: 6.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSVREAHFNDVDFNLEDWVVRYVDDAEDARVLLELLRTVQAMPMKDAKAHDALMSRARE CCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH MIEILAPLNMDLETLQAAVLFSVQEAGLLPQEKLVEKFGDKLGNLVASVVTMNAIGSLKL HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE SEQSRSAEMQIDNIRKMLLAMVEDVRAVVIKLAERVCLLRAVKNADEETRVLLAREIADI CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH YAPLANRLGIGQLKWELEDISFRYLHPETYKEIAKQLDGKRIDRETYIEQFVNDLQAKLD HHHHHHCCCCCCEEEEEECCEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC EEHIRAKVYGRPKHIYSIWRKMKGKHLKFDELFDVRAVRIVTDRLQDCYGALGVVHTLYH HHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HIPREFDDYVANPKPNGYQSIHTIVVGPEGKTVEIQIRTEAMHQDAELGVAAHWKYKEGH HCCHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEEEEEHHHHCCCCCCCEEEEEEECCCC AGKQSGYEEKINWLRKILQWQEDVVESGNLVEEIRSQVFEDRVYVFTPSGEVVDLPAGST CCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEECCCCCEEECCCCCH VLDFAYYIHSQVGHKCIGAKVDGRIVPFTYQVETGERIEIITSKHPNPKRDWLNPNLGYI HHHHHHHHHHHHCCHHCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCE KTSRARSKIQHWFKQQDRDKNLAAGREMLEVELGRVGLTLKDAASAIERFNMTNMDDLLA ECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHH AIGGGDVRLNQVVNHIQSRMRVHEISDEEAVEDLVKKGQHKPIAKTRDQIEVNGVGNLLS HHCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHCCCCEEECCHHHHHH HIAQCCRPVPGDEIFGFITKGRGISVHRADCEQVKELMRAHPERVVDVVWGENYSGGYKI HHHHHCCCCCCCHHEEEEECCCCCEEEHHHHHHHHHHHHHCHHHEEEHHCCCCCCCCEEE RLRVLANDRTGLLRDLTSVLAAEKSNVLAMSSSSDIKNQTAAIELELELYNVDGLSRVLS EEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEEEEEEECCCHHHHHHH KLGQVDGVIEARRL HHHHHCCHHHHCCC >Mature Secondary Structure MVSVREAHFNDVDFNLEDWVVRYVDDAEDARVLLELLRTVQAMPMKDAKAHDALMSRARE CCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH MIEILAPLNMDLETLQAAVLFSVQEAGLLPQEKLVEKFGDKLGNLVASVVTMNAIGSLKL HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE SEQSRSAEMQIDNIRKMLLAMVEDVRAVVIKLAERVCLLRAVKNADEETRVLLAREIADI CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH YAPLANRLGIGQLKWELEDISFRYLHPETYKEIAKQLDGKRIDRETYIEQFVNDLQAKLD HHHHHHCCCCCCEEEEEECCEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC EEHIRAKVYGRPKHIYSIWRKMKGKHLKFDELFDVRAVRIVTDRLQDCYGALGVVHTLYH HHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HIPREFDDYVANPKPNGYQSIHTIVVGPEGKTVEIQIRTEAMHQDAELGVAAHWKYKEGH HCCHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEEEEEHHHHCCCCCCCEEEEEEECCCC AGKQSGYEEKINWLRKILQWQEDVVESGNLVEEIRSQVFEDRVYVFTPSGEVVDLPAGST CCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEECCCCCEEECCCCCH VLDFAYYIHSQVGHKCIGAKVDGRIVPFTYQVETGERIEIITSKHPNPKRDWLNPNLGYI HHHHHHHHHHHHCCHHCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCE KTSRARSKIQHWFKQQDRDKNLAAGREMLEVELGRVGLTLKDAASAIERFNMTNMDDLLA ECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHH AIGGGDVRLNQVVNHIQSRMRVHEISDEEAVEDLVKKGQHKPIAKTRDQIEVNGVGNLLS HHCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHCCCCEEECCHHHHHH HIAQCCRPVPGDEIFGFITKGRGISVHRADCEQVKELMRAHPERVVDVVWGENYSGGYKI HHHHHCCCCCCCHHEEEEECCCCCEEEHHHHHHHHHHHHHCHHHEEEHHCCCCCCCCEEE RLRVLANDRTGLLRDLTSVLAAEKSNVLAMSSSSDIKNQTAAIELELELYNVDGLSRVLS EEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEEEEEEECCCHHHHHHH KLGQVDGVIEARRL HHHHHCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]