Click here to switch to the map view.

The map label for this gene is yhjC [H]

Identifier: 119774165

GI number: 119774165

Start: 1243869

End: 1244771

Strand: Direct

Name: yhjC [H]

Synonym: Sama_1028

Alternate gene names: 119774165

Gene position: 1243869-1244771 (Clockwise)

Preceding gene: 119774161

Following gene: 119774169

Centisome position: 28.89

GC content: 56.04

Gene sequence:

>903_bases
ATGAGAGAGCATCCGGGCAGCGAACTTGAATTGATTTACCTCTTTGTGCAGCTGGTGGACGCCGGTAGCCTGTCTGCCGT
GGCCGACCGCCTTTCGATGCCGGTGGCGACTGTCAGTCGTAAATTATCCCGCCTGGAAGAAAACCGAGGCCGTCAGCTGT
TGATGCGAAGCACCCGCAAAATTCGCCTCACCGAAGAGGGTATGGCGCTTTACGAGCGTTACAAGTCTCTGGTGAGCGCC
GTGGACGCCCTTTATGGTGATGGCGAAGACCCGCTGGAAGGCACGCTGCGTATTGCCGCCCCCATCTCTATCATCTCGAT
GATTTTTATGAAAACCATTAACGAGTTTCGGCGGGAATATCCGGGGATCAGGCTGCATATCACCCAAAAAAACGAGGTAG
TCGACCTTATCGACAAGGGCATAGATATCGCCATCGTGGGCGGTATTCAGCCGGACTCGTCCTGGATAGCGGTACCCCTT
GGGACACTGGATTACCGCCTGGTGGCGTCGCCTGGGTATCTGCAGCGCCGGGGCATGCCAACTCATCCCAGCAGCCTTGC
TGCCCACGACATCATCAAGGTATGGCCTTTGTATAACTGGTCGCTGAGGCATCCACAGGGGGAGGCCTTCTATTATGACG
GACCCGCGAGCCTGACGCTGACCGACCTGCAGGGGGCTATCAGTGCCTGTGTGGATGATGGTGGCATATTGTATGGGCCG
GAACTCTTCTTTAAACAGGAGCTGCAACGGGGCCTGCTGTTGCCGGTATTGCCGGATTGGCGGGGAGAAACGCGGCGGAT
TTCGATTTTGTGTCACCAGCGGCAGCAACAACCTGCCAAGGTAAAAGCCTTTATCGATTTTATGAAGTCGCGGGCGCCGG
GGTTATTTACGATGGACGCTTAA

Upstream 100 bases:

>100_bases
CTTTGCAGTGGGGCTCGGCAGGCAAATTAGCATATCATGATGCGAGCTGACCATTGGTCCTTGGTCGCAGGCATATCCAT
GATTAACGGCGGGAAACGGC

Downstream 100 bases:

>100_bases
CCCAACTGCTTTTTGCGTCCCTTGGGAGGGTGACCGGGTTTGCGCTTGGAGGATGATGTGGTGGGAGCCGGATAGTCCTT
CACCGGGGGAAGGACCCCCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MREHPGSELELIYLFVQLVDAGSLSAVADRLSMPVATVSRKLSRLEENRGRQLLMRSTRKIRLTEEGMALYERYKSLVSA
VDALYGDGEDPLEGTLRIAAPISIISMIFMKTINEFRREYPGIRLHITQKNEVVDLIDKGIDIAIVGGIQPDSSWIAVPL
GTLDYRLVASPGYLQRRGMPTHPSSLAAHDIIKVWPLYNWSLRHPQGEAFYYDGPASLTLTDLQGAISACVDDGGILYGP
ELFFKQELQRGLLLPVLPDWRGETRRISILCHQRQQQPAKVKAFIDFMKSRAPGLFTMDA

Sequences:

>Translated_300_residues
MREHPGSELELIYLFVQLVDAGSLSAVADRLSMPVATVSRKLSRLEENRGRQLLMRSTRKIRLTEEGMALYERYKSLVSA
VDALYGDGEDPLEGTLRIAAPISIISMIFMKTINEFRREYPGIRLHITQKNEVVDLIDKGIDIAIVGGIQPDSSWIAVPL
GTLDYRLVASPGYLQRRGMPTHPSSLAAHDIIKVWPLYNWSLRHPQGEAFYYDGPASLTLTDLQGAISACVDDGGILYGP
ELFFKQELQRGLLLPVLPDWRGETRRISILCHQRQQQPAKVKAFIDFMKSRAPGLFTMDA
>Mature_300_residues
MREHPGSELELIYLFVQLVDAGSLSAVADRLSMPVATVSRKLSRLEENRGRQLLMRSTRKIRLTEEGMALYERYKSLVSA
VDALYGDGEDPLEGTLRIAAPISIISMIFMKTINEFRREYPGIRLHITQKNEVVDLIDKGIDIAIVGGIQPDSSWIAVPL
GTLDYRLVASPGYLQRRGMPTHPSSLAAHDIIKVWPLYNWSLRHPQGEAFYYDGPASLTLTDLQGAISACVDDGGILYGP
ELFFKQELQRGLLLPVLPDWRGETRRISILCHQRQQQPAKVKAFIDFMKSRAPGLFTMDA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=291, Percent_Identity=31.2714776632302, Blast_Score=147, Evalue=6e-37,
Organism=Escherichia coli, GI1789639, Length=284, Percent_Identity=28.5211267605634, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=27.7966101694915, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=27.0833333333333, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87081978, Length=287, Percent_Identity=26.8292682926829, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788706, Length=305, Percent_Identity=25.9016393442623, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=25.6849315068493, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1789440, Length=182, Percent_Identity=29.1208791208791, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33681; Mature: 33681

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREHPGSELELIYLFVQLVDAGSLSAVADRLSMPVATVSRKLSRLEENRGRQLLMRSTRK
CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHCCCE
IRLTEEGMALYERYKSLVSAVDALYGDGEDPLEGTLRIAAPISIISMIFMKTINEFRREY
EEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHC
PGIRLHITQKNEVVDLIDKGIDIAIVGGIQPDSSWIAVPLGTLDYRLVASPGYLQRRGMP
CCEEEEEECCCHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCEEEECCCCHHHHCCCC
THPSSLAAHDIIKVWPLYNWSLRHPQGEAFYYDGPASLTLTDLQGAISACVDDGGILYGP
CCCCHHHHHHHHEEECCCCCEECCCCCCEEEECCCCCEEEHHHHHHHHHHHCCCCEEECH
ELFFKQELQRGLLLPVLPDWRGETRRISILCHQRQQQPAKVKAFIDFMKSRAPGLFTMDA
HHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECC
>Mature Secondary Structure
MREHPGSELELIYLFVQLVDAGSLSAVADRLSMPVATVSRKLSRLEENRGRQLLMRSTRK
CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHCCCE
IRLTEEGMALYERYKSLVSAVDALYGDGEDPLEGTLRIAAPISIISMIFMKTINEFRREY
EEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHC
PGIRLHITQKNEVVDLIDKGIDIAIVGGIQPDSSWIAVPLGTLDYRLVASPGYLQRRGMP
CCEEEEEECCCHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCEEEECCCCHHHHCCCC
THPSSLAAHDIIKVWPLYNWSLRHPQGEAFYYDGPASLTLTDLQGAISACVDDGGILYGP
CCCCHHHHHHHHEEECCCCCEECCCCCCEEEECCCCCEEEHHHHHHHHHHHCCCCEEECH
ELFFKQELQRGLLLPVLPDWRGETRRISILCHQRQQQPAKVKAFIDFMKSRAPGLFTMDA
HHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]