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The map label for this gene is ybbK [C]

Identifier: 119774161

GI number: 119774161

Start: 1238214

End: 1238996

Strand: Direct

Name: ybbK [C]

Synonym: Sama_1024

Alternate gene names: 119774161

Gene position: 1238214-1238996 (Clockwise)

Preceding gene: 119774160

Following gene: 119774165

Centisome position: 28.75

GC content: 51.47

Gene sequence:

>783_bases
ATGAATGAGGTTATCTCAAGTCTGCAGGTGTCTTTCAGCCTTGTGGTGTTGCTGTTACTGCTGCTAATTATTTCGATGTT
TCGCATCCTGCGTGAATATGAGCGGGCGGTGGTCTTTATGCTGGGGCGTTTTTACCGTGTCAAAGGACCCGGGCTTATCA
TAGTTATCCCTGTGATCCAGCAAATGGTGCGGGTTGACTTACGCACAGTAGTGATGGATGTGCCATCTCAGGATGTGATC
AGCCGCGACAATGTGTCTGTGAGGGTTAATGCGGTGCTCTATTTTCGGGTTGTCGATCCCCAGAAGGCCATTATCAACGT
GGAAGACTTCTTGAGCGCGACCAGTCAGCTCGCCCAGACCACGTTGAGATCGGTATTGGGGCAACATGAGTTGGATGAAA
TGCTGGCCAATCGCGACATGTTGAATGCCGATATCCAGCGGATATTGGACTCACATACGGATGTTTGGGGGATTAAGGTC
GCCAATGTGGAAATCAAACATGTCGACCTCAACGAGACCATGATCAGAGCCATTGCCCGCCAGGCCGAAGCTGAGCGGGA
ACGGCGAGCCAAGGTGATCCATGCCCTGGGTGAGCTTGAAGCATCGGAGCAATTGGTCGCCGCTGCGGCCAGGCTATCAC
AGGAGCCAAACGCCTTATTGCTGCGTTATCTGCAAACCCTGACCGAAGTGGCCGGTGAAAATAACTCCACCATACTCTTC
CCCCTGCCGATTGAACTGCTCAATCATCTCAGTGGTTTAACATCGTCAAAGACACAGCAATAA

Upstream 100 bases:

>100_bases
AGTGAGCAGGCGCTGCAGAGCGGAACCTGGGTCAGGGTAGAGTCTATCTCCGGGCTCTTGCTGGAGCTTGGTCCGCTGGA
TGAATCAAAGGAGAAACAAG

Downstream 100 bases:

>100_bases
GCTACTGAGCGTCTGTCGGTGGTAGATTACCGCAGAGTTTATTCCAGGAGATAAGGGCCTCAGGGTTGCCGTTTTTGGCG
CTGATATAGGTATTCAATTT

Product: SPFH domain-containing protein/band 7 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MNEVISSLQVSFSLVVLLLLLLIISMFRILREYERAVVFMLGRFYRVKGPGLIIVIPVIQQMVRVDLRTVVMDVPSQDVI
SRDNVSVRVNAVLYFRVVDPQKAIINVEDFLSATSQLAQTTLRSVLGQHELDEMLANRDMLNADIQRILDSHTDVWGIKV
ANVEIKHVDLNETMIRAIARQAEAERERRAKVIHALGELEASEQLVAAAARLSQEPNALLLRYLQTLTEVAGENNSTILF
PLPIELLNHLSGLTSSKTQQ

Sequences:

>Translated_260_residues
MNEVISSLQVSFSLVVLLLLLLIISMFRILREYERAVVFMLGRFYRVKGPGLIIVIPVIQQMVRVDLRTVVMDVPSQDVI
SRDNVSVRVNAVLYFRVVDPQKAIINVEDFLSATSQLAQTTLRSVLGQHELDEMLANRDMLNADIQRILDSHTDVWGIKV
ANVEIKHVDLNETMIRAIARQAEAERERRAKVIHALGELEASEQLVAAAARLSQEPNALLLRYLQTLTEVAGENNSTILF
PLPIELLNHLSGLTSSKTQQ
>Mature_260_residues
MNEVISSLQVSFSLVVLLLLLLIISMFRILREYERAVVFMLGRFYRVKGPGLIIVIPVIQQMVRVDLRTVVMDVPSQDVI
SRDNVSVRVNAVLYFRVVDPQKAIINVEDFLSATSQLAQTTLRSVLGQHELDEMLANRDMLNADIQRILDSHTDVWGIKV
ANVEIKHVDLNETMIRAIARQAEAERERRAKVIHALGELEASEQLVAAAARLSQEPNALLLRYLQTLTEVAGENNSTILF
PLPIELLNHLSGLTSSKTQQ

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI21686995, Length=249, Percent_Identity=47.7911646586345, Blast_Score=213, Evalue=2e-55,
Organism=Homo sapiens, GI221316744, Length=249, Percent_Identity=47.7911646586345, Blast_Score=213, Evalue=2e-55,
Organism=Homo sapiens, GI38016911, Length=248, Percent_Identity=45.5645161290323, Blast_Score=201, Evalue=8e-52,
Organism=Homo sapiens, GI7657615, Length=264, Percent_Identity=36.3636363636364, Blast_Score=150, Evalue=1e-36,
Organism=Homo sapiens, GI7305503, Length=172, Percent_Identity=40.1162790697674, Blast_Score=130, Evalue=1e-30,
Organism=Homo sapiens, GI20149563, Length=159, Percent_Identity=32.7044025157233, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI38016907, Length=66, Percent_Identity=53.030303030303, Blast_Score=68, Evalue=9e-12,
Organism=Escherichia coli, GI1786697, Length=202, Percent_Identity=34.6534653465347, Blast_Score=127, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17569493, Length=249, Percent_Identity=46.1847389558233, Blast_Score=216, Evalue=7e-57,
Organism=Caenorhabditis elegans, GI193209764, Length=240, Percent_Identity=46.6666666666667, Blast_Score=211, Evalue=3e-55,
Organism=Caenorhabditis elegans, GI17569497, Length=237, Percent_Identity=43.4599156118143, Blast_Score=201, Evalue=3e-52,
Organism=Caenorhabditis elegans, GI17569499, Length=243, Percent_Identity=45.2674897119342, Blast_Score=195, Evalue=2e-50,
Organism=Caenorhabditis elegans, GI25153583, Length=253, Percent_Identity=44.2687747035573, Blast_Score=194, Evalue=4e-50,
Organism=Caenorhabditis elegans, GI71987612, Length=243, Percent_Identity=45.2674897119342, Blast_Score=193, Evalue=8e-50,
Organism=Caenorhabditis elegans, GI17570459, Length=242, Percent_Identity=43.801652892562, Blast_Score=193, Evalue=8e-50,
Organism=Caenorhabditis elegans, GI71987621, Length=250, Percent_Identity=44.8, Blast_Score=192, Evalue=1e-49,
Organism=Caenorhabditis elegans, GI71989948, Length=224, Percent_Identity=47.7678571428571, Blast_Score=191, Evalue=4e-49,
Organism=Caenorhabditis elegans, GI193210507, Length=241, Percent_Identity=43.5684647302905, Blast_Score=186, Evalue=1e-47,
Organism=Caenorhabditis elegans, GI17570161, Length=241, Percent_Identity=43.5684647302905, Blast_Score=186, Evalue=2e-47,
Organism=Caenorhabditis elegans, GI32566490, Length=229, Percent_Identity=46.2882096069869, Blast_Score=172, Evalue=1e-43,
Organism=Caenorhabditis elegans, GI71989955, Length=178, Percent_Identity=48.876404494382, Blast_Score=150, Evalue=7e-37,
Organism=Caenorhabditis elegans, GI71989963, Length=114, Percent_Identity=51.7543859649123, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI32564147, Length=173, Percent_Identity=36.9942196531792, Blast_Score=117, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI17542664, Length=248, Percent_Identity=26.2096774193548, Blast_Score=80, Evalue=8e-16,
Organism=Drosophila melanogaster, GI45556022, Length=241, Percent_Identity=48.5477178423236, Blast_Score=205, Evalue=2e-53,
Organism=Drosophila melanogaster, GI62484448, Length=253, Percent_Identity=46.6403162055336, Blast_Score=199, Evalue=2e-51,
Organism=Drosophila melanogaster, GI62484274, Length=253, Percent_Identity=46.6403162055336, Blast_Score=198, Evalue=2e-51,
Organism=Drosophila melanogaster, GI281365664, Length=253, Percent_Identity=46.6403162055336, Blast_Score=198, Evalue=3e-51,
Organism=Drosophila melanogaster, GI24657857, Length=253, Percent_Identity=46.6403162055336, Blast_Score=198, Evalue=3e-51,
Organism=Drosophila melanogaster, GI18860517, Length=251, Percent_Identity=44.6215139442231, Blast_Score=196, Evalue=2e-50,
Organism=Drosophila melanogaster, GI28573263, Length=243, Percent_Identity=38.2716049382716, Blast_Score=177, Evalue=5e-45,
Organism=Drosophila melanogaster, GI21356845, Length=238, Percent_Identity=38.655462184874, Blast_Score=177, Evalue=8e-45,
Organism=Drosophila melanogaster, GI281361633, Length=242, Percent_Identity=36.3636363636364, Blast_Score=170, Evalue=8e-43,
Organism=Drosophila melanogaster, GI281361631, Length=242, Percent_Identity=36.3636363636364, Blast_Score=170, Evalue=8e-43,
Organism=Drosophila melanogaster, GI281361635, Length=181, Percent_Identity=38.6740331491713, Blast_Score=130, Evalue=8e-31,
Organism=Drosophila melanogaster, GI45550506, Length=169, Percent_Identity=39.6449704142012, Blast_Score=126, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 29245; Mature: 29245

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEVISSLQVSFSLVVLLLLLLIISMFRILREYERAVVFMLGRFYRVKGPGLIIVIPVIQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEHHHHH
QMVRVDLRTVVMDVPSQDVISRDNVSVRVNAVLYFRVVDPQKAIINVEDFLSATSQLAQT
HHHHHHHHHHHHCCCCHHHHCCCCCEEEEEEEEEEEEECCHHHHCCHHHHHHHHHHHHHH
TLRSVLGQHELDEMLANRDMLNADIQRILDSHTDVWGIKVANVEIKHVDLNETMIRAIAR
HHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCHHHHHHHHHH
QAEAERERRAKVIHALGELEASEQLVAAAARLSQEPNALLLRYLQTLTEVAGENNSTILF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEE
PLPIELLNHLSGLTSSKTQQ
ECHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNEVISSLQVSFSLVVLLLLLLIISMFRILREYERAVVFMLGRFYRVKGPGLIIVIPVIQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEHHHHH
QMVRVDLRTVVMDVPSQDVISRDNVSVRVNAVLYFRVVDPQKAIINVEDFLSATSQLAQT
HHHHHHHHHHHHCCCCHHHHCCCCCEEEEEEEEEEEEECCHHHHCCHHHHHHHHHHHHHH
TLRSVLGQHELDEMLANRDMLNADIQRILDSHTDVWGIKVANVEIKHVDLNETMIRAIAR
HHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCHHHHHHHHHH
QAEAERERRAKVIHALGELEASEQLVAAAARLSQEPNALLLRYLQTLTEVAGENNSTILF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEE
PLPIELLNHLSGLTSSKTQQ
ECHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]