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The map label for this gene is rbfA

Identifier: 119774099

GI number: 119774099

Start: 1163813

End: 1164226

Strand: Direct

Name: rbfA

Synonym: Sama_0962

Alternate gene names: 119774099

Gene position: 1163813-1164226 (Clockwise)

Preceding gene: 119774098

Following gene: 119774100

Centisome position: 27.03

GC content: 53.86

Gene sequence:

>414_bases
ATGGCAAGAGAATTTAGTCGTACCCGCCGCATCGGTCAGCAGCTGCAACAGGAGCTGGCCTTTGTACTGCAGCGGGACAT
GAAAGATCCTCGCATCGGCATGGTAACCGTCAATGACGTGGATGTATCCCGCGATCTGAGCCACGCCAAAGTATACGTGA
CCTTTTTCGAGGAAGATCCTCAAGTTATCGAAGCCAAGCTGGCAGCCCTGAATACGGCTGCACCTTATGCCCGTACTCTG
GTGGCTGGTCGCATGAAGCTTAGGGTCATGCCTGAGCTGCGCTTTATCTACGATGCGTCTCTGGTTGAAGGTATGCGCAT
GTCAAACCTGGTGAGTAAGGTCATTCGTGACGATGAGGCCAAGAAAGGTCACATTGGCGATGAACCCCAGGAAGGGCAGC
GCGAGGAAGACTGA

Upstream 100 bases:

>100_bases
ATCAAATTGAAGTGTTCGAAACTATCGAAGTCGCACGAACACTCTAACAACCAAAAAAGGGCGGCTCAGGCCGCCCTTGT
TGATTTTATGGTAAGTAATC

Downstream 100 bases:

>100_bases
TGGCAAGACGCACCAAAGGGCGCAATATCGACGGTATCGTCCTGCTGGATAAACCCACGGGCATGAGTTCCAATCATGCC
CTGCAGCGGGTTAAGCGCAT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MAREFSRTRRIGQQLQQELAFVLQRDMKDPRIGMVTVNDVDVSRDLSHAKVYVTFFEEDPQVIEAKLAALNTAAPYARTL
VAGRMKLRVMPELRFIYDASLVEGMRMSNLVSKVIRDDEAKKGHIGDEPQEGQREED

Sequences:

>Translated_137_residues
MAREFSRTRRIGQQLQQELAFVLQRDMKDPRIGMVTVNDVDVSRDLSHAKVYVTFFEEDPQVIEAKLAALNTAAPYARTL
VAGRMKLRVMPELRFIYDASLVEGMRMSNLVSKVIRDDEAKKGHIGDEPQEGQREED
>Mature_136_residues
AREFSRTRRIGQQLQQELAFVLQRDMKDPRIGMVTVNDVDVSRDLSHAKVYVTFFEEDPQVIEAKLAALNTAAPYARTLV
AGRMKLRVMPELRFIYDASLVEGMRMSNLVSKVIRDDEAKKGHIGDEPQEGQREED

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=133, Percent_Identity=48.8721804511278, Blast_Score=136, Evalue=6e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_SHEAM (A1S463)

Other databases:

- EMBL:   CP000507
- RefSeq:   YP_926839.1
- ProteinModelPortal:   A1S463
- SMR:   A1S463
- STRING:   A1S463
- GeneID:   4603214
- GenomeReviews:   CP000507_GR
- KEGG:   saz:Sama_0962
- NMPDR:   fig|326297.7.peg.903
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   FLRNGLF
- PhylomeDB:   A1S463
- ProtClustDB:   PRK00521
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 15681; Mature: 15550

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAREFSRTRRIGQQLQQELAFVLQRDMKDPRIGMVTVNDVDVSRDLSHAKVYVTFFEEDP
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCH
QVIEAKLAALNTAAPYARTLVAGRMKLRVMPELRFIYDASLVEGMRMSNLVSKVIRDDEA
HHHHHHHHHHHCCCHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KKGHIGDEPQEGQREED
CCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AREFSRTRRIGQQLQQELAFVLQRDMKDPRIGMVTVNDVDVSRDLSHAKVYVTFFEEDP
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCH
QVIEAKLAALNTAAPYARTLVAGRMKLRVMPELRFIYDASLVEGMRMSNLVSKVIRDDEA
HHHHHHHHHHHCCCHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KKGHIGDEPQEGQREED
CCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA