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The map label for this gene is rimM

Identifier: 119774027

GI number: 119774027

Start: 1078336

End: 1078866

Strand: Direct

Name: rimM

Synonym: Sama_0890

Alternate gene names: 119774027

Gene position: 1078336-1078866 (Clockwise)

Preceding gene: 119774026

Following gene: 119774028

Centisome position: 25.04

GC content: 49.72

Gene sequence:

>531_bases
ATGAGCAGTAATCAACAACCTGTAGTAGTAGGCAAAATCGGCTCTACTTACGGCGTAAAGGGTTGGATGAAGATCACCGC
CTATACCGATTCCGTTGAAGGTATTTTCGACTATTCTCCATGGTTCCTTAAAGAACATGGCGAATGGCGTGAGGTGAAGG
TGTCCCAGTGGCGCTTCCACGGCAAGGCGGTCGTCGCCGAGCTTGAGGGAGTCAGCAACCGGGAGCAGGCTCAAATGCTC
ACCAACTGTGAGATTGGGATCCTGGCCGAACAAATGCCTGAGTTGCCCGAAGACGAGTTCTATTGGCGCGATCTCATTGG
CTGTGAGGTACTCAATACCAAGGGTTACAACCTGGGTAAAGTTGATCAGATCCTGGAAACAGGCTCCAACGACGTACTCA
TGGTCAAGGCCAACGCCAAAGATGCTTTCGGCAAAACGGAACGTATGATTCCGTATCTGCCTGACCAGTTTGTCCTTGAG
GTCAAACTGTCAGAAAAACAGATTATTGTGGATTGGGATCCTGACTTCTAA

Upstream 100 bases:

>100_bases
ATCACTGGGTTGGCAACGGTGCTTCTACTACCGATCGCGTAGCCAAGCTGATCAAAGACGCCCGTAAAGCTGCTGCTTAA
TGGCGTGAAGGTATAGATTG

Downstream 100 bases:

>100_bases
ATCGAGGTACCAAACATGTGGTTAGGGGTAATCACCCTGTTTCCCGAAATGTTTCGTGCCATCACTGATTTTGGGGTCAC
GGGTCGGGCCATCAAAAATG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MSSNQQPVVVGKIGSTYGVKGWMKITAYTDSVEGIFDYSPWFLKEHGEWREVKVSQWRFHGKAVVAELEGVSNREQAQML
TNCEIGILAEQMPELPEDEFYWRDLIGCEVLNTKGYNLGKVDQILETGSNDVLMVKANAKDAFGKTERMIPYLPDQFVLE
VKLSEKQIIVDWDPDF

Sequences:

>Translated_176_residues
MSSNQQPVVVGKIGSTYGVKGWMKITAYTDSVEGIFDYSPWFLKEHGEWREVKVSQWRFHGKAVVAELEGVSNREQAQML
TNCEIGILAEQMPELPEDEFYWRDLIGCEVLNTKGYNLGKVDQILETGSNDVLMVKANAKDAFGKTERMIPYLPDQFVLE
VKLSEKQIIVDWDPDF
>Mature_175_residues
SSNQQPVVVGKIGSTYGVKGWMKITAYTDSVEGIFDYSPWFLKEHGEWREVKVSQWRFHGKAVVAELEGVSNREQAQMLT
NCEIGILAEQMPELPEDEFYWRDLIGCEVLNTKGYNLGKVDQILETGSNDVLMVKANAKDAFGKTERMIPYLPDQFVLEV
KLSEKQIIVDWDPDF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=170, Percent_Identity=48.8235294117647, Blast_Score=206, Evalue=1e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_SHEAM (A1S3Z1)

Other databases:

- EMBL:   CP000507
- RefSeq:   YP_926767.1
- ProteinModelPortal:   A1S3Z1
- SMR:   A1S3Z1
- STRING:   A1S3Z1
- GeneID:   4603142
- GenomeReviews:   CP000507_GR
- KEGG:   saz:Sama_0890
- NMPDR:   fig|326297.7.peg.839
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- PhylomeDB:   A1S3Z1
- ProtClustDB:   PRK00122
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20099; Mature: 19968

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSNQQPVVVGKIGSTYGVKGWMKITAYTDSVEGIFDYSPWFLKEHGEWREVKVSQWRFH
CCCCCCCEEEEECCCCCCCCEEEEEEEEECCCCEEECCCCEEEECCCCEEEEEEEEEEEC
GKAVVAELEGVSNREQAQMLTNCEIGILAEQMPELPEDEFYWRDLIGCEVLNTKGYNLGK
CEEEEEEECCCCCHHHHHHHHCCCEEEEHHHCCCCCCCCHHHHHHCCEEEECCCCCCCCH
VDQILETGSNDVLMVKANAKDAFGKTERMIPYLPDQFVLEVKLSEKQIIVDWDPDF
HHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCC
>Mature Secondary Structure 
SSNQQPVVVGKIGSTYGVKGWMKITAYTDSVEGIFDYSPWFLKEHGEWREVKVSQWRFH
CCCCCCEEEEECCCCCCCCEEEEEEEEECCCCEEECCCCEEEECCCCEEEEEEEEEEEC
GKAVVAELEGVSNREQAQMLTNCEIGILAEQMPELPEDEFYWRDLIGCEVLNTKGYNLGK
CEEEEEEECCCCCHHHHHHHHCCCEEEEHHHCCCCCCCCHHHHHHCCEEEECCCCCCCCH
VDQILETGSNDVLMVKANAKDAFGKTERMIPYLPDQFVLEVKLSEKQIIVDWDPDF
HHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA