| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is acpS
Identifier: 119774021
GI number: 119774021
Start: 1073007
End: 1073384
Strand: Direct
Name: acpS
Synonym: Sama_0884
Alternate gene names: 119774021
Gene position: 1073007-1073384 (Clockwise)
Preceding gene: 119774020
Following gene: 119774022
Centisome position: 24.92
GC content: 59.52
Gene sequence:
>378_bases ATGTCAGTGCTCGGGCTGGGGACAGACATAGTTGAGATTGAACGTATCCGCAGCCAACTTGAGCGCGGTGGCGACAGGCT CGCCAAGCGGATACTGACGGAATCCGAACTGGCGATTTTTGTCGGCAGCGGTCAGCGCGAGTTGTATCTTGCCAAGCGCT TTGCCGCCAAGGAAGCGGTGGCCAAGGCGCTGGGTACAGGCATAGGTCGTGGCGTGTCGTTTCAACATATCGAGACCTAC AGCGATGAGTTTGGTGCCCCCTGTGTACGCCTGAGTGACGGCGCCCTTGAGCGGATGCAGCAGCTGGGCGGCAGCCAAAT CCGCCTGTCCATCGCCGATGAGCGGCATTATGCGGTGGCAACCGCCATACTCTGTTGA
Upstream 100 bases:
>100_bases ATATTGGCCACGCCATTGTCGCCCGCAGTGCAATCGATGGCCTGGAGAAGGCCGTGCGCGACATGAAGCAGCTGATGCTT GAAGGTCGTCGGGGCGAATA
Downstream 100 bases:
>100_bases GTGCGTAAGTTTAAGGGAGCCTGGCTCCCTTTTTTTGTGGCTGGTGAAAGGTGGCTTGTTAATGAAGGCTTTCTTTGCTT TACTGGTACATCCGTACCAA
Product: 4'-phosphopantetheinyl transferase
Products: NA
Alternate protein names: Holo-ACP synthase; 4'-phosphopantetheinyl transferase AcpS
Number of amino acids: Translated: 125; Mature: 124
Protein sequence:
>125_residues MSVLGLGTDIVEIERIRSQLERGGDRLAKRILTESELAIFVGSGQRELYLAKRFAAKEAVAKALGTGIGRGVSFQHIETY SDEFGAPCVRLSDGALERMQQLGGSQIRLSIADERHYAVATAILC
Sequences:
>Translated_125_residues MSVLGLGTDIVEIERIRSQLERGGDRLAKRILTESELAIFVGSGQRELYLAKRFAAKEAVAKALGTGIGRGVSFQHIETY SDEFGAPCVRLSDGALERMQQLGGSQIRLSIADERHYAVATAILC >Mature_124_residues SVLGLGTDIVEIERIRSQLERGGDRLAKRILTESELAIFVGSGQRELYLAKRFAAKEAVAKALGTGIGRGVSFQHIETYS DEFGAPCVRLSDGALERMQQLGGSQIRLSIADERHYAVATAILC
Specific function: Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein
COG id: COG0736
COG function: function code I; Phosphopantetheinyl transferase (holo-ACP synthase)
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the P-Pant transferase superfamily. AcpS family
Homologues:
Organism=Escherichia coli, GI1788916, Length=124, Percent_Identity=51.6129032258064, Blast_Score=132, Evalue=7e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): ACPS_SHEAM (A1S3Y5)
Other databases:
- EMBL: CP000507 - RefSeq: YP_926761.1 - ProteinModelPortal: A1S3Y5 - SMR: A1S3Y5 - STRING: A1S3Y5 - GeneID: 4603136 - GenomeReviews: CP000507_GR - KEGG: saz:Sama_0884 - NMPDR: fig|326297.7.peg.833 - eggNOG: COG0736 - HOGENOM: HBG734479 - OMA: NSSAIAY - PhylomeDB: A1S3Y5 - ProtClustDB: PRK00070 - GO: GO:0005737 - HAMAP: MF_00101 - InterPro: IPR008278 - InterPro: IPR002582 - InterPro: IPR004568 - ProDom: PD004282 - TIGRFAMs: TIGR00516 - TIGRFAMs: TIGR00556
Pfam domain/function: PF01648 ACPS; SSF56214 4-PPT_transf
EC number: =2.7.8.7
Molecular weight: Translated: 13581; Mature: 13450
Theoretical pI: Translated: 7.42; Mature: 7.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVLGLGTDIVEIERIRSQLERGGDRLAKRILTESELAIFVGSGQRELYLAKRFAAKEAV CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHH AKALGTGIGRGVSFQHIETYSDEFGAPCVRLSDGALERMQQLGGSQIRLSIADERHYAVA HHHHHCCCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHCCCCEEEEEECCCCHHHHH TAILC HHHCC >Mature Secondary Structure SVLGLGTDIVEIERIRSQLERGGDRLAKRILTESELAIFVGSGQRELYLAKRFAAKEAV CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHH AKALGTGIGRGVSFQHIETYSDEFGAPCVRLSDGALERMQQLGGSQIRLSIADERHYAVA HHHHHCCCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHCCCCEEEEEECCCCHHHHH TAILC HHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA