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The map label for this gene is recO [H]

Identifier: 119774019

GI number: 119774019

Start: 1071482

End: 1072156

Strand: Direct

Name: recO [H]

Synonym: Sama_0882

Alternate gene names: 119774019

Gene position: 1071482-1072156 (Clockwise)

Preceding gene: 119774018

Following gene: 119774020

Centisome position: 24.88

GC content: 57.63

Gene sequence:

>675_bases
ATGGAAAGGGGTTACCTGCTGCATTCGCGTCCCTATCGGGAAAACAGCGCCATCGTAAACCTCTTGGTGGATGGCGCAGG
TCGGGTCGATGCCATTGCGCGGCTCGGCAGCGGCAAGCGCTCCAGTCGGGCGCTGCTGCAACCCTTCCAGCCTTTACTGT
TTTCACTGTCGGGCAAGGGAGAACTCAGAACCCTTATTCAGCCCGAAGCCTATGCCCCGGCGATTCCGCTGCAGGGCGAC
GCTCTCTATGCCGCTATGTACCTCAATGAACTCCTGATGCGCTGCCTCAGCCACAGTCATGCGGGCGAGGGGCTGTTTTT
CAGCTACCACCAGACACTGATGTCCATGGCCAAGGGGTTTTGCCAAAGTCAGCTGAGATACTTTGAGCTGTCACTGCTTG
AAGAGCTTGGCGCCTGTCCATCGCTCTCGGATGATACCCTTGGCACGGCCATCAGTGCCGAATGTGCCTACAGGCCCTGC
CCCGAGGGAGGCCTTGCCCCAAGTACACTGGAAAAAGCCATTTCCGGTCGGGCGATTCTTGCTTTGGCCGAGAAGAATCT
CTCCGAGGCCGATTTTGCCGCAGCAAGGCAGTTGCTCAGGTTTCTATTGGCCCCCTTTGTTGGCAATAAGCCCTTGGTCA
GCCGGCAGCTCTTCGCCAATCGAAACAAAAGCTGA

Upstream 100 bases:

>100_bases
GTATTCCTTGAGGTTTGGGTGAAGGTGAAATCCGGCTGGGCCGACGACGAGCGGGCCCTTCGCAGTCTGGGTTACGGCGA
AGATTAATCCCGGGGCCGCG

Downstream 100 bases:

>100_bases
GTTCACACAAGCGTTTGCTGCCAGAGGCAAATACATAGCTGCCTATATCAAGGCTCGGAGTGATTCAGTACAATGCAGTC
AATATTGCCAAGACAATTCT

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O [H]

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MERGYLLHSRPYRENSAIVNLLVDGAGRVDAIARLGSGKRSSRALLQPFQPLLFSLSGKGELRTLIQPEAYAPAIPLQGD
ALYAAMYLNELLMRCLSHSHAGEGLFFSYHQTLMSMAKGFCQSQLRYFELSLLEELGACPSLSDDTLGTAISAECAYRPC
PEGGLAPSTLEKAISGRAILALAEKNLSEADFAAARQLLRFLLAPFVGNKPLVSRQLFANRNKS

Sequences:

>Translated_224_residues
MERGYLLHSRPYRENSAIVNLLVDGAGRVDAIARLGSGKRSSRALLQPFQPLLFSLSGKGELRTLIQPEAYAPAIPLQGD
ALYAAMYLNELLMRCLSHSHAGEGLFFSYHQTLMSMAKGFCQSQLRYFELSLLEELGACPSLSDDTLGTAISAECAYRPC
PEGGLAPSTLEKAISGRAILALAEKNLSEADFAAARQLLRFLLAPFVGNKPLVSRQLFANRNKS
>Mature_224_residues
MERGYLLHSRPYRENSAIVNLLVDGAGRVDAIARLGSGKRSSRALLQPFQPLLFSLSGKGELRTLIQPEAYAPAIPLQGD
ALYAAMYLNELLMRCLSHSHAGEGLFFSYHQTLMSMAKGFCQSQLRYFELSLLEELGACPSLSDDTLGTAISAECAYRPC
PEGGLAPSTLEKAISGRAILALAEKNLSEADFAAARQLLRFLLAPFVGNKPLVSRQLFANRNKS

Specific function: Involved in DNA repair and recF pathway recombination [H]

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family [H]

Homologues:

Organism=Escherichia coli, GI2367140, Length=225, Percent_Identity=37.3333333333333, Blast_Score=137, Evalue=8e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717 [H]

Pfam domain/function: PF02565 RecO; PF11967 RecO_N [H]

EC number: NA

Molecular weight: Translated: 24409; Mature: 24409

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERGYLLHSRPYRENSAIVNLLVDGAGRVDAIARLGSGKRSSRALLQPFQPLLFSLSGKG
CCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
ELRTLIQPEAYAPAIPLQGDALYAAMYLNELLMRCLSHSHAGEGLFFSYHQTLMSMAKGF
CHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
CQSQLRYFELSLLEELGACPSLSDDTLGTAISAECAYRPCPEGGLAPSTLEKAISGRAIL
HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHCCCEEE
ALAEKNLSEADFAAARQLLRFLLAPFVGNKPLVSRQLFANRNKS
EEHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MERGYLLHSRPYRENSAIVNLLVDGAGRVDAIARLGSGKRSSRALLQPFQPLLFSLSGKG
CCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
ELRTLIQPEAYAPAIPLQGDALYAAMYLNELLMRCLSHSHAGEGLFFSYHQTLMSMAKGF
CHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
CQSQLRYFELSLLEELGACPSLSDDTLGTAISAECAYRPCPEGGLAPSTLEKAISGRAIL
HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHCCCEEE
ALAEKNLSEADFAAARQLLRFLLAPFVGNKPLVSRQLFANRNKS
EEHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA