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The map label for this gene is rpoE [H]

Identifier: 119774011

GI number: 119774011

Start: 1064144

End: 1064722

Strand: Direct

Name: rpoE [H]

Synonym: Sama_0874

Alternate gene names: 119774011

Gene position: 1064144-1064722 (Clockwise)

Preceding gene: 119774009

Following gene: 119774012

Centisome position: 24.71

GC content: 53.2

Gene sequence:

>579_bases
ATGAGTGGACAAAAAAGCGATCAAGAGCTCGTAGAGCTGGTGCAGCAGGGAGATAAAAACGCATTCAACCTTCTGGTGCT
CCGTTACCAGAGCAGGGTGATTAACCTGATTTCCCGTTATGTGCGCAATCAGGCCGATGTGGCCGATGTAGCACAGGAAG
CCTTTATCAAGGCTTATCGGGCGCTGGCTAATTTCCGCGGCGAGAGTGCGTTTTACACCTGGCTGTACCGCATCGCGGTC
AACACGGCAAAAAATTATCTGGTATCCCAGGGCCGCAGAGCGCCGGCCAACGATGTCGATGCCGATGATGCCGAGTACTA
TGACGGCAGTGATGCATTAAAAGAGTTTGCCTCGCCGGAGCGACTGATGTTGTCTGACGAAATCAAACGTGTGGTGTTTG
AGACGTTGGAAGAGTTGCCCGAAGAGCTAAAGATGGCCATTTCCCTGCGTGAGCTCGATGGTATGAGCTACGAAGATATC
GCCAACGTGATGGAATGCCCTGTGGGCACTGTGCGTTCGCGGATTTTCAGAGCACGGGAAGTGATAGACAGGAAGCTGCA
GCCGCTGCTGGAGTCCTGA

Upstream 100 bases:

>100_bases
AAAATCGCAGAACTTTTTCAATATACGCTGGTCTACATAGGTAGTTATGATTCGAGCGACTGAAAAATCAGTGTGTTAGA
TTTGGGAGAAGTCGGCTCGA

Downstream 100 bases:

>100_bases
GAAACCTCAGGGTACGTCAGCCATGTTTTTGCACCCTTAAGAGAGACTTGAGTAATGGAAAAGACCGGACAGGAATGGGT
ATCTGCGAGTGTTGATGGCG

Product: RNA polymerase sigma factor RpoE

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MSGQKSDQELVELVQQGDKNAFNLLVLRYQSRVINLISRYVRNQADVADVAQEAFIKAYRALANFRGESAFYTWLYRIAV
NTAKNYLVSQGRRAPANDVDADDAEYYDGSDALKEFASPERLMLSDEIKRVVFETLEELPEELKMAISLRELDGMSYEDI
ANVMECPVGTVRSRIFRAREVIDRKLQPLLES

Sequences:

>Translated_192_residues
MSGQKSDQELVELVQQGDKNAFNLLVLRYQSRVINLISRYVRNQADVADVAQEAFIKAYRALANFRGESAFYTWLYRIAV
NTAKNYLVSQGRRAPANDVDADDAEYYDGSDALKEFASPERLMLSDEIKRVVFETLEELPEELKMAISLRELDGMSYEDI
ANVMECPVGTVRSRIFRAREVIDRKLQPLLES
>Mature_191_residues
SGQKSDQELVELVQQGDKNAFNLLVLRYQSRVINLISRYVRNQADVADVAQEAFIKAYRALANFRGESAFYTWLYRIAVN
TAKNYLVSQGRRAPANDVDADDAEYYDGSDALKEFASPERLMLSDEIKRVVFETLEELPEELKMAISLRELDGMSYEDIA
NVMECPVGTVRSRIFRAREVIDRKLQPLLES

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=190, Percent_Identity=68.9473684210526, Blast_Score=274, Evalue=3e-75,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21969; Mature: 21838

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGQKSDQELVELVQQGDKNAFNLLVLRYQSRVINLISRYVRNQADVADVAQEAFIKAYR
CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
ALANFRGESAFYTWLYRIAVNTAKNYLVSQGRRAPANDVDADDAEYYDGSDALKEFASPE
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCHHHHHHHCCCH
RLMLSDEIKRVVFETLEELPEELKMAISLRELDGMSYEDIANVMECPVGTVRSRIFRARE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHH
VIDRKLQPLLES
HHHHHHHHHHCC
>Mature Secondary Structure 
SGQKSDQELVELVQQGDKNAFNLLVLRYQSRVINLISRYVRNQADVADVAQEAFIKAYR
CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
ALANFRGESAFYTWLYRIAVNTAKNYLVSQGRRAPANDVDADDAEYYDGSDALKEFASPE
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCHHHHHHHCCCH
RLMLSDEIKRVVFETLEELPEELKMAISLRELDGMSYEDIANVMECPVGTVRSRIFRARE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHH
VIDRKLQPLLES
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]