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The map label for this gene is yhcC [H]

Identifier: 119773995

GI number: 119773995

Start: 1048333

End: 1049286

Strand: Direct

Name: yhcC [H]

Synonym: Sama_0858

Alternate gene names: 119773995

Gene position: 1048333-1049286 (Clockwise)

Preceding gene: 119773987

Following gene: 119773996

Centisome position: 24.35

GC content: 54.51

Gene sequence:

>954_bases
GTGTCTCAACCGGTTAGCGTAACGCCCACATTGGATGCGCTGGTAAACACCTTCGGCAATGACTGCCGTCTTCGGTTTGG
CAAGCGGGTACGCAAGTTGACCCTGGATGCGCATTTTACCTGCCCAAACCGCGATGGCAGTCTCGGCATTGGTGGCTGCA
CTTTTTGCCATGTGCCTTCTTTCAACGCCGACGATGGCCAGCAGTTTGATATCCCATCGCAGCTTAAGCGGCAGATGGCC
GGGCGAACTGATGCGCTGTATTTCATTTATTTTCAGGCTTACACCAGTACCTACGATGAGGTTGCCGTACTTAAGCGCAG
ATACGATGAGGCGCTGTCGATTGGGAATGTGGCGGGACTCTTTGTGGGAACACGCCCTGACTGTGTTCCTGATGCGGTGC
TGCATTTGTTGGCCGACTATCAACAGCAGGGGATCGATGTGTGGCTGGATTTGGGGCTGCAGACCGCCCGGGATGACACC
CTGAAAAGAATCAATCGGGGCCATGATTTTGCCATATATGCTGATGCCGTGACCCGGGCCAGAAGGCTGGGCATCAAGGT
GTGTACCCATCTTATCCTGGGATTGCCCGGAGAGACGTCAGAGGATTTCGTCGAATCACACCGGCAGGTGCTGGCACTTG
GAGTCGATGGCCTCAAGCTGCATCCACTGCATATAGTGGAAGGCAGCATCATGGCGAGGCAGTGGCGGGCAGGAAGGCTC
GATACCTTGAGTTTGGATGATTACGTGAACGCCGCGGTGCGTCTTATTCAACGCACTCCGGCAGACATTATTTTACACCG
GGTTACGGCCCACGCCAGGCCGCCTTTGTTATTGGCACCCGATTGGTGTGGTCATAAATGGTTGGGGATGGGGGCCATTT
GCAGCAGTCTGGCACGAACGGGTGGCCAGGGCTGTTTGACTGAATATCCTTACCTCAATGATAAAAATACGTAA

Upstream 100 bases:

>100_bases
GCGCAGCAAAAATGGGAAAAAGGCAGTCCCTTTGACCTGGATCCGGGTGTTACCGAGTCCACGGGTCCATACTGGCGCTT
TCTTTCTAATGGAGGGGCCT

Downstream 100 bases:

>100_bases
GTTTCTTAAGCCTCTCCAACGGCAACAAGAGGTTAATTATTTGTTGAAATTAGAAAATATCCACATGGCTGAAACGCCAT
ACGGTTGCACCGTGGGGCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 316

Protein sequence:

>317_residues
MSQPVSVTPTLDALVNTFGNDCRLRFGKRVRKLTLDAHFTCPNRDGSLGIGGCTFCHVPSFNADDGQQFDIPSQLKRQMA
GRTDALYFIYFQAYTSTYDEVAVLKRRYDEALSIGNVAGLFVGTRPDCVPDAVLHLLADYQQQGIDVWLDLGLQTARDDT
LKRINRGHDFAIYADAVTRARRLGIKVCTHLILGLPGETSEDFVESHRQVLALGVDGLKLHPLHIVEGSIMARQWRAGRL
DTLSLDDYVNAAVRLIQRTPADIILHRVTAHARPPLLLAPDWCGHKWLGMGAICSSLARTGGQGCLTEYPYLNDKNT

Sequences:

>Translated_317_residues
MSQPVSVTPTLDALVNTFGNDCRLRFGKRVRKLTLDAHFTCPNRDGSLGIGGCTFCHVPSFNADDGQQFDIPSQLKRQMA
GRTDALYFIYFQAYTSTYDEVAVLKRRYDEALSIGNVAGLFVGTRPDCVPDAVLHLLADYQQQGIDVWLDLGLQTARDDT
LKRINRGHDFAIYADAVTRARRLGIKVCTHLILGLPGETSEDFVESHRQVLALGVDGLKLHPLHIVEGSIMARQWRAGRL
DTLSLDDYVNAAVRLIQRTPADIILHRVTAHARPPLLLAPDWCGHKWLGMGAICSSLARTGGQGCLTEYPYLNDKNT
>Mature_316_residues
SQPVSVTPTLDALVNTFGNDCRLRFGKRVRKLTLDAHFTCPNRDGSLGIGGCTFCHVPSFNADDGQQFDIPSQLKRQMAG
RTDALYFIYFQAYTSTYDEVAVLKRRYDEALSIGNVAGLFVGTRPDCVPDAVLHLLADYQQQGIDVWLDLGLQTARDDTL
KRINRGHDFAIYADAVTRARRLGIKVCTHLILGLPGETSEDFVESHRQVLALGVDGLKLHPLHIVEGSIMARQWRAGRLD
TLSLDDYVNAAVRLIQRTPADIILHRVTAHARPPLLLAPDWCGHKWLGMGAICSSLARTGGQGCLTEYPYLNDKNT

Specific function: Unknown

COG id: COG1242

COG function: function code R; Predicted Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0486 [H]

Homologues:

Organism=Homo sapiens, GI23510283, Length=174, Percent_Identity=27.5862068965517, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI2367204, Length=304, Percent_Identity=53.2894736842105, Blast_Score=327, Evalue=6e-91,
Organism=Saccharomyces cerevisiae, GI6325171, Length=179, Percent_Identity=24.5810055865922, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005911
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 35133; Mature: 35001

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQPVSVTPTLDALVNTFGNDCRLRFGKRVRKLTLDAHFTCPNRDGSLGIGGCTFCHVPS
CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCEEEEECCC
FNADDGQQFDIPSQLKRQMAGRTDALYFIYFQAYTSTYDEVAVLKRRYDEALSIGNVAGL
CCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEEHHCCHHHHHHHHHHHHHHHCCCCCCEE
FVGTRPDCVPDAVLHLLADYQQQGIDVWLDLGLQTARDDTLKRINRGHDFAIYADAVTRA
EECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEHHHHHHH
RRLGIKVCTHLILGLPGETSEDFVESHRQVLALGVDGLKLHPLHIVEGSIMARQWRAGRL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEEECCCCEEECEEEEECCHHHHHHHCCCCC
DTLSLDDYVNAAVRLIQRTPADIILHRVTAHARPPLLLAPDWCGHKWLGMGAICSSLART
CEECHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHC
GGQGCLTEYPYLNDKNT
CCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SQPVSVTPTLDALVNTFGNDCRLRFGKRVRKLTLDAHFTCPNRDGSLGIGGCTFCHVPS
CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCEEEEECCC
FNADDGQQFDIPSQLKRQMAGRTDALYFIYFQAYTSTYDEVAVLKRRYDEALSIGNVAGL
CCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEEHHCCHHHHHHHHHHHHHHHCCCCCCEE
FVGTRPDCVPDAVLHLLADYQQQGIDVWLDLGLQTARDDTLKRINRGHDFAIYADAVTRA
EECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEHHHHHHH
RRLGIKVCTHLILGLPGETSEDFVESHRQVLALGVDGLKLHPLHIVEGSIMARQWRAGRL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEEECCCCEEECEEEEECCHHHHHHHCCCCC
DTLSLDDYVNAAVRLIQRTPADIILHRVTAHARPPLLLAPDWCGHKWLGMGAICSSLART
CEECHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHC
GGQGCLTEYPYLNDKNT
CCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]