Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119773854

Identifier: 119773854

GI number: 119773854

Start: 879995

End: 880399

Strand: Direct

Name: 119773854

Synonym: Sama_0716

Alternate gene names: NA

Gene position: 879995-880399 (Clockwise)

Preceding gene: 119773853

Following gene: 119773855

Centisome position: 20.44

GC content: 53.09

Gene sequence:

>405_bases
ATGAAATTGAAGTATCTCTCTCTGGTCGCCGCATTAACGGGTCTTGCTGCCTGCTCTTCCACCGAGCCGCCGCCACGGGT
CGCGCAGGACAAAAAAGTGGCCGTGGAAGGTGTTGAGCTCACCTTCGGTGGCAGCTTTGATGAGCGTAAAAATCTGCTGG
TGCTGAAGGTGAATGGCGATCCCATCATGCAGGGCTCTTTCCCTCCTTACACCCCAACCCAGAACCTGAGTGCCAAATAC
AAGGATATGAACATCAAAGGAAATTGCTACTTTGGTTCAGTACTTGGCCGTCAGGGTGGGGCATTCGGCGCCATTGCCGG
TGCTATTCAATCGTCCAAAAACAGCACCGCCGACAAGTGTGAGCTGCTGGTGGATGGCAAGCAGGTAGAACAGCTGTATT
TCTGA

Upstream 100 bases:

>100_bases
GTACATGTACAACCTGCTCAAGTAAGCTTTTTTATTTATACAAGTCGCTGATTATTAAGAACACAACTGGATTTTTACCC
CAAAAAGGAAGTCGTTGAAA

Downstream 100 bases:

>100_bases
TTGTGAGCCTGTGCGGGGCGGTATGTTGCCGCCCTTTTTTATGGATAGTTGATGGAGATGGCCCAGAGCCATACAGGATG
TTTCCATGATGAAATTCAAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MKLKYLSLVAALTGLAACSSTEPPPRVAQDKKVAVEGVELTFGGSFDERKNLLVLKVNGDPIMQGSFPPYTPTQNLSAKY
KDMNIKGNCYFGSVLGRQGGAFGAIAGAIQSSKNSTADKCELLVDGKQVEQLYF

Sequences:

>Translated_134_residues
MKLKYLSLVAALTGLAACSSTEPPPRVAQDKKVAVEGVELTFGGSFDERKNLLVLKVNGDPIMQGSFPPYTPTQNLSAKY
KDMNIKGNCYFGSVLGRQGGAFGAIAGAIQSSKNSTADKCELLVDGKQVEQLYF
>Mature_134_residues
MKLKYLSLVAALTGLAACSSTEPPPRVAQDKKVAVEGVELTFGGSFDERKNLLVLKVNGDPIMQGSFPPYTPTQNLSAKY
KDMNIKGNCYFGSVLGRQGGAFGAIAGAIQSSKNSTADKCELLVDGKQVEQLYF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14311; Mature: 14311

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKYLSLVAALTGLAACSSTEPPPRVAQDKKVAVEGVELTFGGSFDERKNLLVLKVNGD
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCC
PIMQGSFPPYTPTQNLSAKYKDMNIKGNCYFGSVLGRQGGAFGAIAGAIQSSKNSTADKC
EEEECCCCCCCCCCCCCCEEECCCCCCCEEECCEECCCCCCHHHHHHHHHCCCCCCCCCE
ELLVDGKQVEQLYF
EEEECCHHHHHHCC
>Mature Secondary Structure
MKLKYLSLVAALTGLAACSSTEPPPRVAQDKKVAVEGVELTFGGSFDERKNLLVLKVNGD
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCC
PIMQGSFPPYTPTQNLSAKYKDMNIKGNCYFGSVLGRQGGAFGAIAGAIQSSKNSTADKC
EEEECCCCCCCCCCCCCCEEECCCCCCCEEECCEECCCCCCHHHHHHHHHCCCCCCCCCE
ELLVDGKQVEQLYF
EEEECCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA