Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119773841

Identifier: 119773841

GI number: 119773841

Start: 866231

End: 867118

Strand: Direct

Name: 119773841

Synonym: Sama_0703

Alternate gene names: NA

Gene position: 866231-867118 (Clockwise)

Preceding gene: 119773840

Following gene: 119773842

Centisome position: 20.12

GC content: 56.53

Gene sequence:

>888_bases
ATGAAGCACCAAAAGGGACAGGCTCTCGTCGAAAGTGCCATCGCCATGGCCTTTATTATCATTCCTGTGCTGCTGTTGCT
GCCGTTTTTGCACAAGATTTCTGAGGTCAAACACAGGAATACCCAGGCAGCCCAGTACGCCGCCTGGGAGCGCACCGTGT
GGCGGGTAGACAGGCCCCGTGAGTTTCCCGGTGGCCAGTTCCACTATGCCAGCAAAACCGAAGCCAATCTGAACGCCGAA
TTGCCCTGGCGCTTTTATCAGCAAAATGGTCAGGCGGTGCGCAGCAACTATACCGAAGAATGGAGTTGGCAGGAAAAGAG
TCATTCGCTGCTCAAACACACGCTGTCCCCCGATGAACCCCAGTCACTGCTGCTCAAATCCGCCAGTGAAACCCCCGAGG
ACAACAAGGGGGCAGACCGTTTGGCGGCCAGTGTCTCAGGGCGTAAAGCGCCGGGCCTGTGGGAGACCAGCGTGGGCACG
GCGAGAAACCTGCTTTCTTACACAGGCTTCGCCCTGGACCGCAATCGTTTCTATGTGGCCAATGTAGGGACAGACCTTGA
GAAATTTCGGGTCTTTCCCCTGAAAGGCGCCGATGGCGACCCGATGGAAGCGCTGGACCTAAAAATTGAAAGCAAGAGCG
CGCTTTTGACCCATGCCTGGAATGCCGGTGGCCCGGCACATGCCAAACGCCAAACCGAGCGGCTGGTGTTGACCAAGTAC
GCGGACATCAAGCCGGTGACCCTGCTGCAAAGCGTCCTGGGGCTTATCCCCTTTGGCCGGGAGATCAAGCCAAACAGCCT
GAGATTTGGCCACACGGATGTGGAAGCATTACCCGCAAATAGGCTTTGTAACTATGGTTCTGCCAACTGCGGAGACGGAG
GAAAATGA

Upstream 100 bases:

>100_bases
CAACCTGTACAACCCCTTCTGGCAGCCCCATCTGACCGATAACTCAGGTGCGGACCGTCGTTGGGTTTACGTACTGACCG
CGGCCTTGTAGGAGTTGTTG

Downstream 100 bases:

>100_bases
TGCGTTGCCTGTTACTGATAAGCCTGATTTGCAGTCTCTCGGTGTTGGCCGATGAGTGGCCGGATATGCCGTTCCCGGAC
AAGGGCAGCGCGCAAATAGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MKHQKGQALVESAIAMAFIIIPVLLLLPFLHKISEVKHRNTQAAQYAAWERTVWRVDRPREFPGGQFHYASKTEANLNAE
LPWRFYQQNGQAVRSNYTEEWSWQEKSHSLLKHTLSPDEPQSLLLKSASETPEDNKGADRLAASVSGRKAPGLWETSVGT
ARNLLSYTGFALDRNRFYVANVGTDLEKFRVFPLKGADGDPMEALDLKIESKSALLTHAWNAGGPAHAKRQTERLVLTKY
ADIKPVTLLQSVLGLIPFGREIKPNSLRFGHTDVEALPANRLCNYGSANCGDGGK

Sequences:

>Translated_295_residues
MKHQKGQALVESAIAMAFIIIPVLLLLPFLHKISEVKHRNTQAAQYAAWERTVWRVDRPREFPGGQFHYASKTEANLNAE
LPWRFYQQNGQAVRSNYTEEWSWQEKSHSLLKHTLSPDEPQSLLLKSASETPEDNKGADRLAASVSGRKAPGLWETSVGT
ARNLLSYTGFALDRNRFYVANVGTDLEKFRVFPLKGADGDPMEALDLKIESKSALLTHAWNAGGPAHAKRQTERLVLTKY
ADIKPVTLLQSVLGLIPFGREIKPNSLRFGHTDVEALPANRLCNYGSANCGDGGK
>Mature_295_residues
MKHQKGQALVESAIAMAFIIIPVLLLLPFLHKISEVKHRNTQAAQYAAWERTVWRVDRPREFPGGQFHYASKTEANLNAE
LPWRFYQQNGQAVRSNYTEEWSWQEKSHSLLKHTLSPDEPQSLLLKSASETPEDNKGADRLAASVSGRKAPGLWETSVGT
ARNLLSYTGFALDRNRFYVANVGTDLEKFRVFPLKGADGDPMEALDLKIESKSALLTHAWNAGGPAHAKRQTERLVLTKY
ADIKPVTLLQSVLGLIPFGREIKPNSLRFGHTDVEALPANRLCNYGSANCGDGGK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32863; Mature: 32863

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHQKGQALVESAIAMAFIIIPVLLLLPFLHKISEVKHRNTQAAQYAAWERTVWRVDRPR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
EFPGGQFHYASKTEANLNAELPWRFYQQNGQAVRSNYTEEWSWQEKSHSLLKHTLSPDEP
CCCCCEEEECCCCCCCCCCCCCHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCH
QSLLLKSASETPEDNKGADRLAASVSGRKAPGLWETSVGTARNLLSYTGFALDRNRFYVA
HHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCEEEECCEEEEE
NVGTDLEKFRVFPLKGADGDPMEALDLKIESKSALLTHAWNAGGPAHAKRQTERLVLTKY
ECCCCHHHEEEEEECCCCCCCCHHEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
ADIKPVTLLQSVLGLIPFGREIKPNSLRFGHTDVEALPANRLCNYGSANCGDGGK
CCCCHHHHHHHHHHHCCCCCCCCCCCEECCCCCHHHCCHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKHQKGQALVESAIAMAFIIIPVLLLLPFLHKISEVKHRNTQAAQYAAWERTVWRVDRPR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
EFPGGQFHYASKTEANLNAELPWRFYQQNGQAVRSNYTEEWSWQEKSHSLLKHTLSPDEP
CCCCCEEEECCCCCCCCCCCCCHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCH
QSLLLKSASETPEDNKGADRLAASVSGRKAPGLWETSVGTARNLLSYTGFALDRNRFYVA
HHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCEEEECCEEEEE
NVGTDLEKFRVFPLKGADGDPMEALDLKIESKSALLTHAWNAGGPAHAKRQTERLVLTKY
ECCCCHHHEEEEEECCCCCCCCHHEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
ADIKPVTLLQSVLGLIPFGREIKPNSLRFGHTDVEALPANRLCNYGSANCGDGGK
CCCCHHHHHHHHHHHCCCCCCCCCCCEECCCCCHHHCCHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA