Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119773840

Identifier: 119773840

GI number: 119773840

Start: 864848

End: 866221

Strand: Direct

Name: 119773840

Synonym: Sama_0702

Alternate gene names: NA

Gene position: 864848-866221 (Clockwise)

Preceding gene: 119773839

Following gene: 119773841

Centisome position: 20.08

GC content: 56.04

Gene sequence:

>1374_bases
ATGTTGAAATCTCGTCAAGGCGGCCAGGCCATGGTCCTGTCCCTCATTTTGCTTGGTTTTACCGTGATGGCGATGCTGTT
TGGATTTAACGCATCTCAGCTCAATCACGAGGGTACCAGGCTGCAAAATACTGCTGACAATACGGTTTACAGCCTGGCAA
ACATCGTAGCCAGAGATATGAATTTCAAGGCCTATACCAACAGGGCCGCCGTCGCCAATCAGGTCGCTGTCGCGCAAATG
GTGGGCCTGTCTGCCTGGTTTAATATGACCGACACCTTCACCGATAACGCCTGTACCCTGCTGTGCTGGGTGCCTTATCT
CGGCCAGGCAATCAATGCGGTCGCCAGGGTGACCAACAGCATCAATCAGGGGGCACAGCCCTTCTTTAAGGCCATGGTGA
ATGTGGAAAACCTTCTCCTCAAGGCTATCAGTACCGCCCAGGTGGCAGTGAACTACGCGGGACTGGTCGGCGGCATAGAT
ACCGCCATGGAGGTGGTTAAGGCCAACGACCCCACGGCGCGACTCGATTTAATGCAAAACCCGTTGGCGCTCGAAGATGT
CAGGCATATCTGGATGGATTTCCAGCAAAGATTCAGTCGGGATAAATCCAGAGACGGTACCCAGTACAAAGACTTTTTGG
CCGTGACGTCAAACTCCAGGGATGGCTTTACCAAAGGCACAAACTACAAACTCGGATTTCCCTGGTCACTGAAGTCCTGG
CCGCTGCGCTGGGCAACCAAAAAGGCCGGTGGCAGCGACTTGATTTCAAACGGCGATCGCGAGGCCGAAACCTGGACGTC
AGCCCACACCCTGGGCATTCACCTCGAACGCTGGAGCTGTAAGCGATTCCGCTGCAAATGGCGTGGCGGCGAGATCCCGG
TTGGCTGGGGCGGTACCCGTTCCGATGACAGAAAGAGCCTGCGCAATGTCTCCGGCAACAAGGTCTGGGGTGGCAGTCGC
GGCGTAAACCGCAGCGCCACCAATCTGGCGGCGTACAACGAAGAAACCCGCGGTAACTACGATGGGGTGCAGCCCTTCTA
TGCGCTGGACAAAGACGGCGACAGTGTCAGTGAGACCAAAAACATCGCCATAGTAGTGTCCAAACCACAAAACCGTATCC
GCACCAGTGCCAGGCTCGATGTGGGTCATGACAACACAGACCCCGCTACCAACGAAGAAATGTATGGCGATCGAATGTCG
GCAATGGCATCGGCCAGCGTGTTCTATTCGCGGCCTCAGGATCTCACAGCCTGGCGGCGCAAGGATGGGCGCAGCGAATA
CGGCAACCTGTACAACCCCTTCTGGCAGCCCCATCTGACCGATAACTCAGGTGCGGACCGTCGTTGGGTTTACGTACTGA
CCGCGGCCTTGTAG

Upstream 100 bases:

>100_bases
AAGGCTGCCGAAGGAGACTCCACAGGCGGTGGTGGTACCGGAGGTGGGGGTCCCGTGGTGGACTGACCCAGTGCGATAAA
GGATTGCCGGAGAAGCAAGG

Downstream 100 bases:

>100_bases
GAGTTGTTGATGAAGCACCAAAAGGGACAGGCTCTCGTCGAAAGTGCCATCGCCATGGCCTTTATTATCATTCCTGTGCT
GCTGTTGCTGCCGTTTTTGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 457; Mature: 457

Protein sequence:

>457_residues
MLKSRQGGQAMVLSLILLGFTVMAMLFGFNASQLNHEGTRLQNTADNTVYSLANIVARDMNFKAYTNRAAVANQVAVAQM
VGLSAWFNMTDTFTDNACTLLCWVPYLGQAINAVARVTNSINQGAQPFFKAMVNVENLLLKAISTAQVAVNYAGLVGGID
TAMEVVKANDPTARLDLMQNPLALEDVRHIWMDFQQRFSRDKSRDGTQYKDFLAVTSNSRDGFTKGTNYKLGFPWSLKSW
PLRWATKKAGGSDLISNGDREAETWTSAHTLGIHLERWSCKRFRCKWRGGEIPVGWGGTRSDDRKSLRNVSGNKVWGGSR
GVNRSATNLAAYNEETRGNYDGVQPFYALDKDGDSVSETKNIAIVVSKPQNRIRTSARLDVGHDNTDPATNEEMYGDRMS
AMASASVFYSRPQDLTAWRRKDGRSEYGNLYNPFWQPHLTDNSGADRRWVYVLTAAL

Sequences:

>Translated_457_residues
MLKSRQGGQAMVLSLILLGFTVMAMLFGFNASQLNHEGTRLQNTADNTVYSLANIVARDMNFKAYTNRAAVANQVAVAQM
VGLSAWFNMTDTFTDNACTLLCWVPYLGQAINAVARVTNSINQGAQPFFKAMVNVENLLLKAISTAQVAVNYAGLVGGID
TAMEVVKANDPTARLDLMQNPLALEDVRHIWMDFQQRFSRDKSRDGTQYKDFLAVTSNSRDGFTKGTNYKLGFPWSLKSW
PLRWATKKAGGSDLISNGDREAETWTSAHTLGIHLERWSCKRFRCKWRGGEIPVGWGGTRSDDRKSLRNVSGNKVWGGSR
GVNRSATNLAAYNEETRGNYDGVQPFYALDKDGDSVSETKNIAIVVSKPQNRIRTSARLDVGHDNTDPATNEEMYGDRMS
AMASASVFYSRPQDLTAWRRKDGRSEYGNLYNPFWQPHLTDNSGADRRWVYVLTAAL
>Mature_457_residues
MLKSRQGGQAMVLSLILLGFTVMAMLFGFNASQLNHEGTRLQNTADNTVYSLANIVARDMNFKAYTNRAAVANQVAVAQM
VGLSAWFNMTDTFTDNACTLLCWVPYLGQAINAVARVTNSINQGAQPFFKAMVNVENLLLKAISTAQVAVNYAGLVGGID
TAMEVVKANDPTARLDLMQNPLALEDVRHIWMDFQQRFSRDKSRDGTQYKDFLAVTSNSRDGFTKGTNYKLGFPWSLKSW
PLRWATKKAGGSDLISNGDREAETWTSAHTLGIHLERWSCKRFRCKWRGGEIPVGWGGTRSDDRKSLRNVSGNKVWGGSR
GVNRSATNLAAYNEETRGNYDGVQPFYALDKDGDSVSETKNIAIVVSKPQNRIRTSARLDVGHDNTDPATNEEMYGDRMS
AMASASVFYSRPQDLTAWRRKDGRSEYGNLYNPFWQPHLTDNSGADRRWVYVLTAAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50870; Mature: 50870

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKSRQGGQAMVLSLILLGFTVMAMLFGFNASQLNHEGTRLQNTADNTVYSLANIVARDM
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC
NFKAYTNRAAVANQVAVAQMVGLSAWFNMTDTFTDNACTLLCWVPYLGQAINAVARVTNS
CCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHH
INQGAQPFFKAMVNVENLLLKAISTAQVAVNYAGLVGGIDTAMEVVKANDPTARLDLMQN
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
PLALEDVRHIWMDFQQRFSRDKSRDGTQYKDFLAVTSNSRDGFTKGTNYKLGFPWSLKSW
CHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHEEEEECCCCCCCCCCCCEEECCCCCCCCC
PLRWATKKAGGSDLISNGDREAETWTSAHTLGIHLERWSCKRFRCKWRGGEIPVGWGGTR
CCCHHHCCCCCCHHHCCCCCCHHHHHCCEEEEEEEECCCCCEEEEEECCCCEECCCCCCC
SDDRKSLRNVSGNKVWGGSRGVNRSATNLAAYNEETRGNYDGVQPFYALDKDGDSVSETK
CHHHHHHHCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCC
NIAIVVSKPQNRIRTSARLDVGHDNTDPATNEEMYGDRMSAMASASVFYSRPQDLTAWRR
CEEEEEECCHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
KDGRSEYGNLYNPFWQPHLTDNSGADRRWVYVLTAAL
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MLKSRQGGQAMVLSLILLGFTVMAMLFGFNASQLNHEGTRLQNTADNTVYSLANIVARDM
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC
NFKAYTNRAAVANQVAVAQMVGLSAWFNMTDTFTDNACTLLCWVPYLGQAINAVARVTNS
CCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHH
INQGAQPFFKAMVNVENLLLKAISTAQVAVNYAGLVGGIDTAMEVVKANDPTARLDLMQN
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
PLALEDVRHIWMDFQQRFSRDKSRDGTQYKDFLAVTSNSRDGFTKGTNYKLGFPWSLKSW
CHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHEEEEECCCCCCCCCCCCEEECCCCCCCCC
PLRWATKKAGGSDLISNGDREAETWTSAHTLGIHLERWSCKRFRCKWRGGEIPVGWGGTR
CCCHHHCCCCCCHHHCCCCCCHHHHHCCEEEEEEEECCCCCEEEEEECCCCEECCCCCCC
SDDRKSLRNVSGNKVWGGSRGVNRSATNLAAYNEETRGNYDGVQPFYALDKDGDSVSETK
CHHHHHHHCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCC
NIAIVVSKPQNRIRTSARLDVGHDNTDPATNEEMYGDRMSAMASASVFYSRPQDLTAWRR
CEEEEEECCHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
KDGRSEYGNLYNPFWQPHLTDNSGADRRWVYVLTAAL
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA