| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773709
Identifier: 119773709
GI number: 119773709
Start: 710172
End: 711323
Strand: Direct
Name: 119773709
Synonym: Sama_0571
Alternate gene names: NA
Gene position: 710172-711323 (Clockwise)
Preceding gene: 119773708
Following gene: 119773710
Centisome position: 16.49
GC content: 51.82
Gene sequence:
>1152_bases ATGAAAGTCACTGAATATCTGCTGCTGTCCTTACTTTACAGCGGTGCGGCCTGTGCCGGTGAATGGCAATTCAATGGCTA TCTCAGCCAGGGGCTGGTGGCTGTAAGTGGCAGTGACTTTTTTACCGATGGCGATGATGTGAGTTTTTCGCTGTCTGAGG CATCCTTGATGACATCCTGGCGGCCAACTGAAACGATTCGCCTGGCTGGGGCCTTGGTTTACCGGCAACGGGGTAACCTC AGCGATGAACATTTCCACTTGGATTACTTGTTCGCTGAATACCTTTACCCCCTCGAAAATGGCTTTACCGGTATTCGCCT TGGCCGGGTAAAAAACGAAATCGGGTTTTATTCCAGCACCCGTGACGTGCCCTTTACCCGCCCTGCCATACTCTTGCCTC AATCCATCTACGCTGACTACTACCGCGATGCCCAATCACATGTGGACGGAGGTGAGCTGCTTGGCCATCACAGCTTGAGC GGTGGCATCCTTGAATGGAATGTCAGTGGCGGCGTGCTTCATGTCACCGATGATTTGAGCCGTAATATTATTGGCTCTCT CGATTATGGCCGTTTTCAGTCTGACTACTTTTATTCACTGGATATTGATTACAGCAATGACAGGTGGCGACTGGGCGGGA ATCTATACCAAACCCGCATGAATTTTGAAACGGACCTTGCCAGTATGCATGGCGACGTTGAGCTATTGGCCTATGTGCTG TCTGCCCAGTATCGCTGGTCTCAGTGGGAGTTCACCACAGAGTTTTCCCGGGGCTGGCGAACCCTGAGCGAAAACATGCT GTTGGAAGAATCGGGTGCCGAGCAGCCCTATCGCGGCTATTACCTTGATGTTCGCTATCTGATGGGAGAACAGCTGGAAT GGTTTGTCCGCTACGACCATTCGGTGGAAAACCTGGACGATCCCCATGGTAAACGCCTCGCACAGCAGGGATTGCCTGAG TATTTTGGTTACAGCAAAGATTGGAGCCTGGGGCTTAAGTGGCGCTTTGCAGACAGTTGGCAATTGGGGGCGGAGTATCA CTGGGTGGAAGGTGCGTCCTGGGTGCCCCCTATTGTTAATAAAATACCCGCAACACAGGACGAAGACTGGTCCATTTTTG CGCTGCAACTCTCGTATCGATTGCAATGGTGA
Upstream 100 bases:
>100_bases GAAATCGTGGCCAGCCCTGACCAGATGCGGCGTAGAGTGATGGAAACCCCTGGCTCAATCGGTTACGTGCCGGATGAGAC TACCGCAAAGGATACTGCCC
Downstream 100 bases:
>100_bases GCCTATGAATGAGATAGCACAAAGCCGTTGGTATCTGAGCCTGAGATGGAAGTTACTGGGGGCCGTGTTTACGCTGATGA GCATTCTTACCCTGGTCTTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 383; Mature: 383
Protein sequence:
>383_residues MKVTEYLLLSLLYSGAACAGEWQFNGYLSQGLVAVSGSDFFTDGDDVSFSLSEASLMTSWRPTETIRLAGALVYRQRGNL SDEHFHLDYLFAEYLYPLENGFTGIRLGRVKNEIGFYSSTRDVPFTRPAILLPQSIYADYYRDAQSHVDGGELLGHHSLS GGILEWNVSGGVLHVTDDLSRNIIGSLDYGRFQSDYFYSLDIDYSNDRWRLGGNLYQTRMNFETDLASMHGDVELLAYVL SAQYRWSQWEFTTEFSRGWRTLSENMLLEESGAEQPYRGYYLDVRYLMGEQLEWFVRYDHSVENLDDPHGKRLAQQGLPE YFGYSKDWSLGLKWRFADSWQLGAEYHWVEGASWVPPIVNKIPATQDEDWSIFALQLSYRLQW
Sequences:
>Translated_383_residues MKVTEYLLLSLLYSGAACAGEWQFNGYLSQGLVAVSGSDFFTDGDDVSFSLSEASLMTSWRPTETIRLAGALVYRQRGNL SDEHFHLDYLFAEYLYPLENGFTGIRLGRVKNEIGFYSSTRDVPFTRPAILLPQSIYADYYRDAQSHVDGGELLGHHSLS GGILEWNVSGGVLHVTDDLSRNIIGSLDYGRFQSDYFYSLDIDYSNDRWRLGGNLYQTRMNFETDLASMHGDVELLAYVL SAQYRWSQWEFTTEFSRGWRTLSENMLLEESGAEQPYRGYYLDVRYLMGEQLEWFVRYDHSVENLDDPHGKRLAQQGLPE YFGYSKDWSLGLKWRFADSWQLGAEYHWVEGASWVPPIVNKIPATQDEDWSIFALQLSYRLQW >Mature_383_residues MKVTEYLLLSLLYSGAACAGEWQFNGYLSQGLVAVSGSDFFTDGDDVSFSLSEASLMTSWRPTETIRLAGALVYRQRGNL SDEHFHLDYLFAEYLYPLENGFTGIRLGRVKNEIGFYSSTRDVPFTRPAILLPQSIYADYYRDAQSHVDGGELLGHHSLS GGILEWNVSGGVLHVTDDLSRNIIGSLDYGRFQSDYFYSLDIDYSNDRWRLGGNLYQTRMNFETDLASMHGDVELLAYVL SAQYRWSQWEFTTEFSRGWRTLSENMLLEESGAEQPYRGYYLDVRYLMGEQLEWFVRYDHSVENLDDPHGKRLAQQGLPE YFGYSKDWSLGLKWRFADSWQLGAEYHWVEGASWVPPIVNKIPATQDEDWSIFALQLSYRLQW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44197; Mature: 44197
Theoretical pI: Translated: 4.48; Mature: 4.48
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVTEYLLLSLLYSGAACAGEWQFNGYLSQGLVAVSGSDFFTDGDDVSFSLSEASLMTSW CCHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCEEEECHHHHHCCC RPTETIRLAGALVYRQRGNLSDEHFHLDYLFAEYLYPLENGFTGIRLGRVKNEIGFYSST CCCHHHHHHHHEEEHHCCCCCCCCEEHHHHHHHHHHHHHCCCCEEEEECHHHHHCCCCCC RDVPFTRPAILLPQSIYADYYRDAQSHVDGGELLGHHSLSGGILEWNVSGGVLHVTDDLS CCCCCCCCCEECCHHHHHHHHHHHHHCCCCHHHEECCCCCCCEEEEECCCCEEEEECCCC RNIIGSLDYGRFQSDYFYSLDIDYSNDRWRLGGNLYQTRMNFETDLASMHGDVELLAYVL HHHHCCCCCCCCCCCEEEEEEEECCCCCEEECCEEEEEECCCHHHHHHHCCCHHHHHHHH SAQYRWSQWEFTTEFSRGWRTLSENMLLEESGAEQPYRGYYLDVRYLMGEQLEWFVRYDH HCCCCCCCEEEEHHHHHHHHHHHHCEEEECCCCCCCCCCEEEEEHHHHCCCEEEEEEECC SVENLDDPHGKRLAQQGLPEYFGYSKDWSLGLKWRFADSWQLGAEYHWVEGASWVPPIVN CCCCCCCHHHHHHHHHCCHHHCCCCCCCCEEEEEEECCCEECCCEEEEECCCCCCCHHHH KIPATQDEDWSIFALQLSYRLQW HCCCCCCCCCEEEEEEEEEEECC >Mature Secondary Structure MKVTEYLLLSLLYSGAACAGEWQFNGYLSQGLVAVSGSDFFTDGDDVSFSLSEASLMTSW CCHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCEEEECHHHHHCCC RPTETIRLAGALVYRQRGNLSDEHFHLDYLFAEYLYPLENGFTGIRLGRVKNEIGFYSST CCCHHHHHHHHEEEHHCCCCCCCCEEHHHHHHHHHHHHHCCCCEEEEECHHHHHCCCCCC RDVPFTRPAILLPQSIYADYYRDAQSHVDGGELLGHHSLSGGILEWNVSGGVLHVTDDLS CCCCCCCCCEECCHHHHHHHHHHHHHCCCCHHHEECCCCCCCEEEEECCCCEEEEECCCC RNIIGSLDYGRFQSDYFYSLDIDYSNDRWRLGGNLYQTRMNFETDLASMHGDVELLAYVL HHHHCCCCCCCCCCCEEEEEEEECCCCCEEECCEEEEEECCCHHHHHHHCCCHHHHHHHH SAQYRWSQWEFTTEFSRGWRTLSENMLLEESGAEQPYRGYYLDVRYLMGEQLEWFVRYDH HCCCCCCCEEEEHHHHHHHHHHHHCEEEECCCCCCCCCCEEEEEHHHHCCCEEEEEEECC SVENLDDPHGKRLAQQGLPEYFGYSKDWSLGLKWRFADSWQLGAEYHWVEGASWVPPIVN CCCCCCCHHHHHHHHHCCHHHCCCCCCCCEEEEEEECCCEECCCEEEEECCCCCCCHHHH KIPATQDEDWSIFALQLSYRLQW HCCCCCCCCCEEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA