Click here to switch to the map view.

The map label for this gene is ybhR [C]

Identifier: 119773619

GI number: 119773619

Start: 589935

End: 591062

Strand: Direct

Name: ybhR [C]

Synonym: Sama_0479

Alternate gene names: 119773619

Gene position: 589935-591062 (Clockwise)

Preceding gene: 119773618

Following gene: 119773620

Centisome position: 13.7

GC content: 56.65

Gene sequence:

>1128_bases
ATGAAGACCCTGCTGCGCCGTGAGCTTGGTGCACTGTGGCAAAACCCCTGGCAACTGGCGCTGGTAAGTTACCTGCCCAT
TCTTGCCATGTTGGCACTTTGGTGGCTCTTCAGTGCCGCCTTGCCGAGGCAGCTGCCAGTCGCCATGGTGGATCTTGATA
ACAGCAGCCTGAGCCGTGAACTGGGTCGGCATATAGCCGCAAGCCCTGTCATCAGTCCCATCTCTTTCGCGTCATTGCCA
CAGGCCGAGGACGCCATGAACCGGGCCGAGGTCTATGCTCTGGTGGTGGTACCCCACGGGTTTTCCCGCGATCTGAAAAC
TGGTGCTCAGCCCACGGTGGATGTGCGATACAACGGCCAGTTTTTATTGGTGGGCAAACTGCTTGCCGCCAATTTGCAGC
AAGCCATCGCCGATGCCATGAAGCCTCTGGCCTACAGCAAGCAGCTGGCTCATGGCGCCAATCCTCATCAGGCGCACATC
AATATTGCCCCCATCGCCACCCAAACCACGGCGCTCTTTAACCGGAACAACAACTATGTGGGCTTTTTGGTGCCGCCGGT
GTTGATTGCACTGTGGCAGCTCACGGCCATGTTGGTGTTTGCCAACGCCCTCAACCGCGAGTTGGAACCCTCGGCGCGGT
GCGATTCTGTGGGCTTGCTGCCCAGGCTGGGCGCCAAGTTACTCTGCTATATGCCGCTGTTGATGTTGCAGGGGCTGTTT
ATCCATGCGCTGTTGTTTGGCTACTTAAAACTGCCGGTGGCTGCTTCGCCACTGTGGCTCATTCCTGCCATGCTGGCCCT
GTTGCTTGCAGTATTTTTGATAGTGGCGGTGATATTTTTGCTGATGCAGGAGTCTGCCCGTGTCGTCAGTTTTTGCACCG
CGCTCTTTGCTCCGGCGTTTGCCTTCATGGGAGTGACCTTTCCGGTTCAGGATATGCCGGCAGCGGCGCAGTATTGGCGT
CTGCTGATGCCATCGAGCCACTATATCGACTCCCATATTGCTCTGGTGAGTTATGGCGTAAGCGGCATGGAGTTACTGGG
TAAGAGTTTCACTTTTATGCCGTTTCTGCTGCTTCTGTTGCCCATTGCGCTGCTGGCACGCAAGGGGCTTAAGGAGGCGC
AGTCATGA

Upstream 100 bases:

>100_bases
TGGTCACGACTTTGACCTGCGCACCTTCAAGGTGGAGCTGGTGCCCCAGCACCCCATTGAAGGATTGCGGGTTGGCATGT
CTGCCATTTGGGAATGAACC

Downstream 100 bases:

>100_bases
CGCTGCTTCGGCTTATCCTTGAAGAGCTCAAAGCCATAGTCGCCGATAAGGCGATTGCCGTTACTCTGTTTGGTGGCGTG
CTGTTTTATGCCTTGCTGTA

Product: hypothetical protein

Products: NA

Alternate protein names: ABC-Type Multidrug Transport System Permease Component; Permease Component Of ABC Transporter; ABC-2 Type Transport System Permease Protein; Transport-Related Membrane Protein; ABC-2 Type Transporter Superfamily; ABC-2 Type Transport System Permease; ABC Transporter Transmembrane Permease; Daunorubicin Resistance Transmembrane Protein; Multidrug ABC Transporter Permease Component; Conserved Transporter; ABC Transporter Permease; Multidrug ABC Transporter Permease Protein; ABC-Type Multidrug Transport System; ABC-2 Type Transporter Family; ABC Transporter Transmembrane Protein; ABC-Type Multidrug Transporter Permease Component

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MKTLLRRELGALWQNPWQLALVSYLPILAMLALWWLFSAALPRQLPVAMVDLDNSSLSRELGRHIAASPVISPISFASLP
QAEDAMNRAEVYALVVVPHGFSRDLKTGAQPTVDVRYNGQFLLVGKLLAANLQQAIADAMKPLAYSKQLAHGANPHQAHI
NIAPIATQTTALFNRNNNYVGFLVPPVLIALWQLTAMLVFANALNRELEPSARCDSVGLLPRLGAKLLCYMPLLMLQGLF
IHALLFGYLKLPVAASPLWLIPAMLALLLAVFLIVAVIFLLMQESARVVSFCTALFAPAFAFMGVTFPVQDMPAAAQYWR
LLMPSSHYIDSHIALVSYGVSGMELLGKSFTFMPFLLLLLPIALLARKGLKEAQS

Sequences:

>Translated_375_residues
MKTLLRRELGALWQNPWQLALVSYLPILAMLALWWLFSAALPRQLPVAMVDLDNSSLSRELGRHIAASPVISPISFASLP
QAEDAMNRAEVYALVVVPHGFSRDLKTGAQPTVDVRYNGQFLLVGKLLAANLQQAIADAMKPLAYSKQLAHGANPHQAHI
NIAPIATQTTALFNRNNNYVGFLVPPVLIALWQLTAMLVFANALNRELEPSARCDSVGLLPRLGAKLLCYMPLLMLQGLF
IHALLFGYLKLPVAASPLWLIPAMLALLLAVFLIVAVIFLLMQESARVVSFCTALFAPAFAFMGVTFPVQDMPAAAQYWR
LLMPSSHYIDSHIALVSYGVSGMELLGKSFTFMPFLLLLLPIALLARKGLKEAQS
>Mature_375_residues
MKTLLRRELGALWQNPWQLALVSYLPILAMLALWWLFSAALPRQLPVAMVDLDNSSLSRELGRHIAASPVISPISFASLP
QAEDAMNRAEVYALVVVPHGFSRDLKTGAQPTVDVRYNGQFLLVGKLLAANLQQAIADAMKPLAYSKQLAHGANPHQAHI
NIAPIATQTTALFNRNNNYVGFLVPPVLIALWQLTAMLVFANALNRELEPSARCDSVGLLPRLGAKLLCYMPLLMLQGLF
IHALLFGYLKLPVAASPLWLIPAMLALLLAVFLIVAVIFLLMQESARVVSFCTALFAPAFAFMGVTFPVQDMPAAAQYWR
LLMPSSHYIDSHIALVSYGVSGMELLGKSFTFMPFLLLLLPIALLARKGLKEAQS

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41123; Mature: 41123

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLLRRELGALWQNPWQLALVSYLPILAMLALWWLFSAALPRQLPVAMVDLDNSSLSRE
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHH
LGRHIAASPVISPISFASLPQAEDAMNRAEVYALVVVPHGFSRDLKTGAQPTVDVRYNGQ
HHHHHHCCCCCCCHHHHCCCCHHHHHHHHHEEEEEEECCCCCHHHCCCCCCCEEEEECCC
FLLVGKLLAANLQQAIADAMKPLAYSKQLAHGANPHQAHINIAPIATQTTALFNRNNNYV
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHEECCCCEE
GFLVPPVLIALWQLTAMLVFANALNRELEPSARCDSVGLLPRLGAKLLCYMPLLMLQGLF
EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IHALLFGYLKLPVAASPLWLIPAMLALLLAVFLIVAVIFLLMQESARVVSFCTALFAPAF
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFMGVTFPVQDMPAAAQYWRLLMPSSHYIDSHIALVSYGVSGMELLGKSFTFMPFLLLLL
HHHCCCCCHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHH
PIALLARKGLKEAQS
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MKTLLRRELGALWQNPWQLALVSYLPILAMLALWWLFSAALPRQLPVAMVDLDNSSLSRE
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHH
LGRHIAASPVISPISFASLPQAEDAMNRAEVYALVVVPHGFSRDLKTGAQPTVDVRYNGQ
HHHHHHCCCCCCCHHHHCCCCHHHHHHHHHEEEEEEECCCCCHHHCCCCCCCEEEEECCC
FLLVGKLLAANLQQAIADAMKPLAYSKQLAHGANPHQAHINIAPIATQTTALFNRNNNYV
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHEECCCCEE
GFLVPPVLIALWQLTAMLVFANALNRELEPSARCDSVGLLPRLGAKLLCYMPLLMLQGLF
EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IHALLFGYLKLPVAASPLWLIPAMLALLLAVFLIVAVIFLLMQESARVVSFCTALFAPAF
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFMGVTFPVQDMPAAAQYWRLLMPSSHYIDSHIALVSYGVSGMELLGKSFTFMPFLLLLL
HHHCCCCCHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHH
PIALLARKGLKEAQS
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA