| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is yhiI [C]
Identifier: 119773618
GI number: 119773618
Start: 588963
End: 589931
Strand: Direct
Name: yhiI [C]
Synonym: Sama_0478
Alternate gene names: 119773618
Gene position: 588963-589931 (Clockwise)
Preceding gene: 119773617
Following gene: 119773619
Centisome position: 13.68
GC content: 59.65
Gene sequence:
>969_bases ATGACAGTCAATCGTTTGCTGGCAACGTCTGCACTGGTCGCGCTGGTGATTGCCCTCGGCTGGGGGCTGATGCTGGCTCA CACTCCTGCCAAGGCCCCGTTGCAGGGGCAAATCGAAGCCCGTGAATACCATGTGTCTTCCAAGGTGCCCGGCCGCATCG AACAGGTGATGGTGCGCACCGGCGATACAGTGGCGGCAGGGGATTTGCTCTATGTGATTGACAGCCCCGAACTAAATGCC AAGTTGATGCAGGCCGAAGGGGGCCGGGATGCGGCCCGCGCCATGCAGCTTGAGGCCGACACAGGTGCCCGCAAGCAGCA GATTGCGGCCCAGAAAGAGCAGTGGCTCAAGGCAAAGGCCGGGTTGGAACTCGCGAAAACCACCTTCGAGCGGGTGGATA ACCTCTTTAACGAAGGCGTGGTGCCACGGCAAAAACGCGATGAAGCCTATACCCAGTGGCAGGCGGCCAGATATACAGAG CAGGCGGCACTGGCTGTGTATCAGATGACAGAAGAAGGCGCCCGGGAAGAAACCAAGGCGGCAGCCGCCGGTAATGCCCG CATGGCCGAGGGCGCTGTGAAAGAAGTGAGTGCCATTCTGGCCGACAGCCAGATGCGCGCACCGCGGGGCGGTGAAGTGT CGGAAGTGTTGCTGCAATCCGGCGAGCTGGCGCCGTCCGGCTTCCCTGTGGTGAGTCTGGTGGACATGAACGACGCATGG GCAGTGTTCCAGCTGCGGGAAGACATGCTTAAGGATGTGAAAAAAGGTGAACTGAAACAGCTGTATATTCCAGCACTGGA TATCAGCGCCGGGTTTAAGGTGAGCCACATAGCTGTGATGGGCGACTTTGCCACCTGGCGCTCCACCGAGAGTGGTCACG ACTTTGACCTGCGCACCTTCAAGGTGGAGCTGGTGCCCCAGCACCCCATTGAAGGATTGCGGGTTGGCATGTCTGCCATT TGGGAATGA
Upstream 100 bases:
>100_bases GTTATGTGCAGGCCTATGCGCGCCTGATGGCCATCTCGGGCCAGTTGGATGAATTTATCGGTCAGGCCCAGCGAGCGTCT GCCACCATGGGAGAAAAACA
Downstream 100 bases:
>100_bases ACCATGAAGACCCTGCTGCGCCGTGAGCTTGGTGCACTGTGGCAAAACCCCTGGCAACTGGCGCTGGTAAGTTACCTGCC CATTCTTGCCATGTTGGCAC
Product: HlyD family secretion protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 322; Mature: 321
Protein sequence:
>322_residues MTVNRLLATSALVALVIALGWGLMLAHTPAKAPLQGQIEAREYHVSSKVPGRIEQVMVRTGDTVAAGDLLYVIDSPELNA KLMQAEGGRDAARAMQLEADTGARKQQIAAQKEQWLKAKAGLELAKTTFERVDNLFNEGVVPRQKRDEAYTQWQAARYTE QAALAVYQMTEEGAREETKAAAAGNARMAEGAVKEVSAILADSQMRAPRGGEVSEVLLQSGELAPSGFPVVSLVDMNDAW AVFQLREDMLKDVKKGELKQLYIPALDISAGFKVSHIAVMGDFATWRSTESGHDFDLRTFKVELVPQHPIEGLRVGMSAI WE
Sequences:
>Translated_322_residues MTVNRLLATSALVALVIALGWGLMLAHTPAKAPLQGQIEAREYHVSSKVPGRIEQVMVRTGDTVAAGDLLYVIDSPELNA KLMQAEGGRDAARAMQLEADTGARKQQIAAQKEQWLKAKAGLELAKTTFERVDNLFNEGVVPRQKRDEAYTQWQAARYTE QAALAVYQMTEEGAREETKAAAAGNARMAEGAVKEVSAILADSQMRAPRGGEVSEVLLQSGELAPSGFPVVSLVDMNDAW AVFQLREDMLKDVKKGELKQLYIPALDISAGFKVSHIAVMGDFATWRSTESGHDFDLRTFKVELVPQHPIEGLRVGMSAI WE >Mature_321_residues TVNRLLATSALVALVIALGWGLMLAHTPAKAPLQGQIEAREYHVSSKVPGRIEQVMVRTGDTVAAGDLLYVIDSPELNAK LMQAEGGRDAARAMQLEADTGARKQQIAAQKEQWLKAKAGLELAKTTFERVDNLFNEGVVPRQKRDEAYTQWQAARYTEQ AALAVYQMTEEGAREETKAAAAGNARMAEGAVKEVSAILADSQMRAPRGGEVSEVLLQSGELAPSGFPVVSLVDMNDAWA VFQLREDMLKDVKKGELKQLYIPALDISAGFKVSHIAVMGDFATWRSTESGHDFDLRTFKVELVPQHPIEGLRVGMSAIW E
Specific function: Unknown
COG id: COG0845
COG function: function code M; Membrane-fusion protein
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]
Homologues:
Organism=Escherichia coli, GI1789900, Length=328, Percent_Identity=25.9146341463415, Blast_Score=67, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006143 [H]
Pfam domain/function: PF00529 HlyD [H]
EC number: NA
Molecular weight: Translated: 35176; Mature: 35044
Theoretical pI: Translated: 5.29; Mature: 5.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVNRLLATSALVALVIALGWGLMLAHTPAKAPLQGQIEAREYHVSSKVPGRIEQVMVRT CCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEHHEEEECCCCCCHHHHHHHHC GDTVAAGDLLYVIDSPELNAKLMQAEGGRDAARAMQLEADTGARKQQIAAQKEQWLKAKA CCEEEECCEEEEECCCCCCEEEEECCCCCHHHHHEEECCCCCHHHHHHHHHHHHHHHHHH GLELAKTTFERVDNLFNEGVVPRQKRDEAYTQWQAARYTEQAALAVYQMTEEGAREETKA CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH AAAGNARMAEGAVKEVSAILADSQMRAPRGGEVSEVLLQSGELAPSGFPVVSLVDMNDAW HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCH AVFQLREDMLKDVKKGELKQLYIPALDISAGFKVSHIAVMGDFATWRSTESGHDFDLRTF HHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEECHHHHCCCCCCCCCCEEEE KVELVPQHPIEGLRVGMSAIWE EEEECCCCCHHHHHHHHHHHCC >Mature Secondary Structure TVNRLLATSALVALVIALGWGLMLAHTPAKAPLQGQIEAREYHVSSKVPGRIEQVMVRT CHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEHHEEEECCCCCCHHHHHHHHC GDTVAAGDLLYVIDSPELNAKLMQAEGGRDAARAMQLEADTGARKQQIAAQKEQWLKAKA CCEEEECCEEEEECCCCCCEEEEECCCCCHHHHHEEECCCCCHHHHHHHHHHHHHHHHHH GLELAKTTFERVDNLFNEGVVPRQKRDEAYTQWQAARYTEQAALAVYQMTEEGAREETKA CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH AAAGNARMAEGAVKEVSAILADSQMRAPRGGEVSEVLLQSGELAPSGFPVVSLVDMNDAW HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCH AVFQLREDMLKDVKKGELKQLYIPALDISAGFKVSHIAVMGDFATWRSTESGHDFDLRTF HHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEECHHHHCCCCCCCCCCEEEE KVELVPQHPIEGLRVGMSAIWE EEEECCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]