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The map label for this gene is slmA

Identifier: 119773465

GI number: 119773465

Start: 392054

End: 392647

Strand: Reverse

Name: slmA

Synonym: Sama_0324

Alternate gene names: 119773465

Gene position: 392647-392054 (Counterclockwise)

Preceding gene: 119773466

Following gene: 119773464

Centisome position: 9.12

GC content: 54.88

Gene sequence:

>594_bases
ATGGCCGCCAAAGAAAAAATCAGCCGCCGCGAACATATTCTCCAGTGTCTGGCTCAGATGCTGGAAACCAATCCGGGACA
ACGTATTACCACCGCGAAACTGGCCGCCGAGGTAGGAGTGTCAGAAGCGGCGCTGTATCGCCACTTCCCCAGCAAGGCGC
GGATGTTTGAGGGCTTGATTGAGTTTATCGAAGACTCACTGCTGTCTCGTATCAACCTCATCATGGACGACGAGAAAGAC
ACCATGCGCCGCTGCCAACTGGTATTGCAGCTGCTGCTGTTGTTTGCCGAACGTAATCCGGGCATCTCGCGGGTACTGAA
TGGCGATGCCCTGCTGGGCGAAAATGAGCGCCTGCGCAGCCGCGTCAGCGCCCTGTTCGGCAAAATCGAAACCCAGCTCA
AGCAAATCCTGCGTGAGAAAACCCTGCGGGAAGGCAAGGGATTCGAACTGGATGAGGCCATGCTGGCCAATCTGCTGCTG
GCAGTGGCCGAAGGCAGAATAGCCCAGTACATTCGCAGCGAGTTCAAGCAAAAACCCACCGAACACTTCGATGAACAGTG
GGGCTTTATTCAGAAACAACTACTACAAAGCTAG

Upstream 100 bases:

>100_bases
TTTAAACTGGTGGACGAGTTCGACACCTCAATGCGCGGCGAAGGTGGTTTTGGCCATTCAGGCACCCGCTAACGTTTGCA
TTTAGTGTGAAGGAATCTCA

Downstream 100 bases:

>100_bases
TTGATTTTAAGGAGAATTAAGGACGGTAAATCACCGTCCTTTTTTATTGTTTGCGGCATACTTTTGTATTAACCTCCAAG
ACGGATTTCAATAACAACCC

Product: nucleoid occlusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MAAKEKISRREHILQCLAQMLETNPGQRITTAKLAAEVGVSEAALYRHFPSKARMFEGLIEFIEDSLLSRINLIMDDEKD
TMRRCQLVLQLLLLFAERNPGISRVLNGDALLGENERLRSRVSALFGKIETQLKQILREKTLREGKGFELDEAMLANLLL
AVAEGRIAQYIRSEFKQKPTEHFDEQWGFIQKQLLQS

Sequences:

>Translated_197_residues
MAAKEKISRREHILQCLAQMLETNPGQRITTAKLAAEVGVSEAALYRHFPSKARMFEGLIEFIEDSLLSRINLIMDDEKD
TMRRCQLVLQLLLLFAERNPGISRVLNGDALLGENERLRSRVSALFGKIETQLKQILREKTLREGKGFELDEAMLANLLL
AVAEGRIAQYIRSEFKQKPTEHFDEQWGFIQKQLLQS
>Mature_196_residues
AAKEKISRREHILQCLAQMLETNPGQRITTAKLAAEVGVSEAALYRHFPSKARMFEGLIEFIEDSLLSRINLIMDDEKDT
MRRCQLVLQLLLLFAERNPGISRVLNGDALLGENERLRSRVSALFGKIETQLKQILREKTLREGKGFELDEAMLANLLLA
VAEGRIAQYIRSEFKQKPTEHFDEQWGFIQKQLLQS

Specific function: Required for nucleoid occlusion (NO) phenomenon, which cooperates in the proper positioning of the ftsZ/septal ring at midcell during cell division

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm, nucleoid

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI87082302, Length=197, Percent_Identity=60.4060913705584, Blast_Score=225, Evalue=2e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SLMA_SHEAM (A1S2C9)

Other databases:

- EMBL:   CP000507
- RefSeq:   YP_926205.1
- ProteinModelPortal:   A1S2C9
- STRING:   A1S2C9
- GeneID:   4602580
- GenomeReviews:   CP000507_GR
- KEGG:   saz:Sama_0324
- NMPDR:   fig|326297.7.peg.309
- eggNOG:   COG1309
- HOGENOM:   HBG297015
- OMA:   EKNPGMT
- PhylomeDB:   A1S2C9
- ProtClustDB:   PRK09480
- GO:   GO:0005737
- GO:   GO:0009295
- HAMAP:   MF_01839
- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- Gene3D:   G3DSA:1.10.357.10

Pfam domain/function: PF00440 TetR_N; SSF46689 Homeodomain_like; SSF48498 TetR_like_C

EC number: NA

Molecular weight: Translated: 22585; Mature: 22453

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS01081 HTH_TETR_1; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAKEKISRREHILQCLAQMLETNPGQRITTAKLAAEVGVSEAALYRHFPSKARMFEGLI
CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHH
EFIEDSLLSRINLIMDDEKDTMRRCQLVLQLLLLFAERNPGISRVLNGDALLGENERLRS
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHCCCCHHHHH
RVSALFGKIETQLKQILREKTLREGKGFELDEAMLANLLLAVAEGRIAQYIRSEFKQKPT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
EHFDEQWGFIQKQLLQS
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AAKEKISRREHILQCLAQMLETNPGQRITTAKLAAEVGVSEAALYRHFPSKARMFEGLI
CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHH
EFIEDSLLSRINLIMDDEKDTMRRCQLVLQLLLLFAERNPGISRVLNGDALLGENERLRS
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHCCCCHHHHH
RVSALFGKIETQLKQILREKTLREGKGFELDEAMLANLLLAVAEGRIAQYIRSEFKQKPT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
EHFDEQWGFIQKQLLQS
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA