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The map label for this gene is 119773454

Identifier: 119773454

GI number: 119773454

Start: 378604

End: 379386

Strand: Reverse

Name: 119773454

Synonym: Sama_0313

Alternate gene names: NA

Gene position: 379386-378604 (Counterclockwise)

Preceding gene: 119773455

Following gene: 119773453

Centisome position: 8.81

GC content: 48.66

Gene sequence:

>783_bases
GTGGATTTTTGGGCGCTTTTTTCAGGCGCATTTGCGCAGGTCTGGTACATCTTTCCGCTTGTCGCCGTTGCGCTGATCTT
TAAGAGTCGCTGGTTTAAAGGAGTCTTCGGCGAGTTTTTGGTCAACAGACAATTATCCGGATTGGCTCAAGCATCTGACG
GTGACTATACGCTGGTAAAGGATGTGACCCTGCCGACCGAGGATGGCACCACCCAGATTGACCATGTTCTGGTCTCCAGG
TTTGGGGTGTTTGTGGTGGAAACCAAGAACATGAAGGGCTGGATTTATGGTTCTGTAAACCAGCGGCAATGGACACAGAA
AATCTATCGCCATTCCTCCAAATTTCAGAATCCGCTGCATCAAAACTATAAACATGTGAAAACGCTGGAGTCACTGTTAG
GCATCGGCATTGAGAAACTGCATTCTGTGATTGTGTTCATTGGTGACAGCACCTTTAAGACCGAGATGCCGGATAACGTG
ACCTATGCCAGTGGCTGCGTGCGTCACATCAAAACCTTCGAGCAGGTCGTATTTTCTGATGAGGAGTATCACAGCCTCAT
TGCGCGGATTGAAGAGATTAAGTTAAAGCGTGGCCTTGTCACTGATATCAAGCACAGACACCATGTGAAAGCGCTGGTAG
CCTGCAAAAGCCAGAACAAGCAGTGTGTTCGCTGTGGCTCAGAAATGGTGATGCGGGAGTCAAAGCGTGGCGACAACAAA
GGCAAGCGATTTTGGGGATGCTCTTCGTACCCTAAATGCAGGGCTATTGAAGAACTGAGTTGA

Upstream 100 bases:

>100_bases
CCGCGACTTTAAGCAGACTACCAAGCGACTTCTCATCAAGGGGTTATAAACTGACCCGTCAGTCATCCAATGAGTTGTCG
CATGCAAACAAGGAGGTTTT

Downstream 100 bases:

>100_bases
TCGTGTTTCGCCACTCAGACGATGTTGTCACAAACATAGAGACTGGCATATGAATAGCGGCGACAGGGCTAACATTTTGC
AGACCAGCCATTAAACATAA

Product: DNA topoisomerase I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MDFWALFSGAFAQVWYIFPLVAVALIFKSRWFKGVFGEFLVNRQLSGLAQASDGDYTLVKDVTLPTEDGTTQIDHVLVSR
FGVFVVETKNMKGWIYGSVNQRQWTQKIYRHSSKFQNPLHQNYKHVKTLESLLGIGIEKLHSVIVFIGDSTFKTEMPDNV
TYASGCVRHIKTFEQVVFSDEEYHSLIARIEEIKLKRGLVTDIKHRHHVKALVACKSQNKQCVRCGSEMVMRESKRGDNK
GKRFWGCSSYPKCRAIEELS

Sequences:

>Translated_260_residues
MDFWALFSGAFAQVWYIFPLVAVALIFKSRWFKGVFGEFLVNRQLSGLAQASDGDYTLVKDVTLPTEDGTTQIDHVLVSR
FGVFVVETKNMKGWIYGSVNQRQWTQKIYRHSSKFQNPLHQNYKHVKTLESLLGIGIEKLHSVIVFIGDSTFKTEMPDNV
TYASGCVRHIKTFEQVVFSDEEYHSLIARIEEIKLKRGLVTDIKHRHHVKALVACKSQNKQCVRCGSEMVMRESKRGDNK
GKRFWGCSSYPKCRAIEELS
>Mature_260_residues
MDFWALFSGAFAQVWYIFPLVAVALIFKSRWFKGVFGEFLVNRQLSGLAQASDGDYTLVKDVTLPTEDGTTQIDHVLVSR
FGVFVVETKNMKGWIYGSVNQRQWTQKIYRHSSKFQNPLHQNYKHVKTLESLLGIGIEKLHSVIVFIGDSTFKTEMPDNV
TYASGCVRHIKTFEQVVFSDEEYHSLIARIEEIKLKRGLVTDIKHRHHVKALVACKSQNKQCVRCGSEMVMRESKRGDNK
GKRFWGCSSYPKCRAIEELS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 NERD domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011528 [H]

Pfam domain/function: PF08378 NERD [H]

EC number: NA

Molecular weight: Translated: 29849; Mature: 29849

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: PS50965 NERD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCEEECCCCCCCCCHHHCCC
>Mature Secondary Structure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CCEEECCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10515943; 12004073 [H]