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The map label for this gene is arnC [H]

Identifier: 119773254

GI number: 119773254

Start: 125758

End: 126489

Strand: Direct

Name: arnC [H]

Synonym: Sama_0112

Alternate gene names: 119773254

Gene position: 125758-126489 (Clockwise)

Preceding gene: 119773253

Following gene: 119773255

Centisome position: 2.92

GC content: 55.87

Gene sequence:

>732_bases
ATGATTTCAGTGGTTATTCCTGCGAAAGATGAGACCGGAAACATAGGTAATCTGGTCAAAGAAATCGCGGCGGCGCTTGC
CGGTCAATCAGATTTCGAAGTAGTGGTAGTTGATGACGGCAGTACGGACGCAACCGGAGAGGAAGTGCTGCAGGCTGCGG
CCGATTGTGGTTGTAACGCCAGTGTAGTGCGTCACCGCAAGAGTACCGGCCAAAGTACAGCAGTACACTCGGGCGTACTG
CATGCCAAAGGAGACTGGATTGTGACCCTCGATGCCGATGGTCAGAACGATCCCGCCGATATCCCGGCCATGATCGCCAT
TGCCCGCACCATCACAAATCCGCATTTTTGTATTGCCGGGTACCGTAAGAATCGCAAGGACACAGCCTGGAAACGTTTTC
AGTCGAGAGTCGCCAATCGTATCCGCGATGCGCTGCTGCATGATGGGGTGCCGGACACCGGCTGCGGCCTGAAACTGTTT
CCGCGGGAAACCTTTCTGCGCCTGCCCCATTTCAACCATATGCACAGATACCTGCCGGCACTGATCCGGCGCCTTGGCGG
TGAAATCCGTATCAGTGAGGTCAATCACAGAGACAGGGGCGCAGGGGTATCCAAGTACAATGCCTGGAACCGCGCCTGGG
TGGGCATTGTCGACCTGATGGGCGTCATGTGGCTTATCCGCAGAGGCAAGATAGCTGAGGTGGAGCGGGTAGACGGTTAC
AGTCATCCATGA

Upstream 100 bases:

>100_bases
CGCGTTTTGTCATTTTTACGACAACTGAGATGGGTATCCTTTCCGGCAGCCGTGCGATATGCTGGCAAGCGGGCTTTTGC
CAAAAAGGAAAGTAGACTCA

Downstream 100 bases:

>100_bases
AAACCCACCTGAAACGGCTCGGTAAATTATCCCTTACCCTGACAGTGCTGGTTCTATTGATGCTGGCCGCCAGGGAGGGA
TGGTTCGATCATCTCACCGA

Product: glycosyl transferase, group 2 family protein

Products: NA

Alternate protein names: Undecaprenyl-phosphate Ara4FN transferase; Ara4FN transferase [H]

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MISVVIPAKDETGNIGNLVKEIAAALAGQSDFEVVVVDDGSTDATGEEVLQAAADCGCNASVVRHRKSTGQSTAVHSGVL
HAKGDWIVTLDADGQNDPADIPAMIAIARTITNPHFCIAGYRKNRKDTAWKRFQSRVANRIRDALLHDGVPDTGCGLKLF
PRETFLRLPHFNHMHRYLPALIRRLGGEIRISEVNHRDRGAGVSKYNAWNRAWVGIVDLMGVMWLIRRGKIAEVERVDGY
SHP

Sequences:

>Translated_243_residues
MISVVIPAKDETGNIGNLVKEIAAALAGQSDFEVVVVDDGSTDATGEEVLQAAADCGCNASVVRHRKSTGQSTAVHSGVL
HAKGDWIVTLDADGQNDPADIPAMIAIARTITNPHFCIAGYRKNRKDTAWKRFQSRVANRIRDALLHDGVPDTGCGLKLF
PRETFLRLPHFNHMHRYLPALIRRLGGEIRISEVNHRDRGAGVSKYNAWNRAWVGIVDLMGVMWLIRRGKIAEVERVDGY
SHP
>Mature_243_residues
MISVVIPAKDETGNIGNLVKEIAAALAGQSDFEVVVVDDGSTDATGEEVLQAAADCGCNASVVRHRKSTGQSTAVHSGVL
HAKGDWIVTLDADGQNDPADIPAMIAIARTITNPHFCIAGYRKNRKDTAWKRFQSRVANRIRDALLHDGVPDTGCGLKLF
PRETFLRLPHFNHMHRYLPALIRRLGGEIRISEVNHRDRGAGVSKYNAWNRAWVGIVDLMGVMWLIRRGKIAEVERVDGY
SHP

Specific function: Catalyzes the transfer of 4-deoxy-4-formamido-L- arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1788588, Length=220, Percent_Identity=26.8181818181818, Blast_Score=99, Evalue=3e-22,
Organism=Saccharomyces cerevisiae, GI6325029, Length=225, Percent_Identity=28.4444444444444, Blast_Score=70, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022857
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: =2.7.8.30 [H]

Molecular weight: Translated: 26708; Mature: 26708

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISVVIPAKDETGNIGNLVKEIAAALAGQSDFEVVVVDDGSTDATGEEVLQAAADCGCNA
CEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCH
SVVRHRKSTGQSTAVHSGVLHAKGDWIVTLDADGQNDPADIPAMIAIARTITNPHFCIAG
HHHHHHHHCCCHHHHHCCCEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEC
YRKNRKDTAWKRFQSRVANRIRDALLHDGVPDTGCGLKLFPRETFLRLPHFNHMHRYLPA
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHCCCHHHHHHHHHH
LIRRLGGEIRISEVNHRDRGAGVSKYNAWNRAWVGIVDLMGVMWLIRRGKIAEVERVDGY
HHHHCCCEEEEEECCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCC
SHP
CCC
>Mature Secondary Structure
MISVVIPAKDETGNIGNLVKEIAAALAGQSDFEVVVVDDGSTDATGEEVLQAAADCGCNA
CEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCH
SVVRHRKSTGQSTAVHSGVLHAKGDWIVTLDADGQNDPADIPAMIAIARTITNPHFCIAG
HHHHHHHHCCCHHHHHCCCEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEC
YRKNRKDTAWKRFQSRVANRIRDALLHDGVPDTGCGLKLFPRETFLRLPHFNHMHRYLPA
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHCCCHHHHHHHHHH
LIRRLGGEIRISEVNHRDRGAGVSKYNAWNRAWVGIVDLMGVMWLIRRGKIAEVERVDGY
HHHHCCCEEEEEECCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCC
SHP
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA