| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773249
Identifier: 119773249
GI number: 119773249
Start: 120147
End: 121730
Strand: Reverse
Name: 119773249
Synonym: Sama_0107
Alternate gene names: NA
Gene position: 121730-120147 (Counterclockwise)
Preceding gene: 119773250
Following gene: 119773248
Centisome position: 2.83
GC content: 52.97
Gene sequence:
>1584_bases ATGTATCTCATTACTTCTGCCGCCATGGTGGCCTCAGAGCTGCAGTCTGAATTCGGACCTCTGCCCCCCTGCTTTTTGCC GGTGGGCAATAAACGCCTGTTCCATCATCAGCTGGCTTTAATTCCCGCCGGCGAACGCACCATCATTACCCTGCCGGAGG GCTTTACCCCCGGTCCTTATGACAGCCAAAGCCTCAAAGACTATGGTGTTGAGCTATTGTACCTGCCGCCAACCCTGAGT TTGGGTGAATCCATCGTCTATGCCCTTATCCAGCTGGAGTTTGCCGACGATGAACCCTTGTATATTCTCCACGGCGATAC CCTGTTCGATAGCCTGCCACGTCAAACCGATTGTCTGGGCCTGAGTCAGGTTGAAGACAACTACAACTGGGCAGAGTTTG ATGCCCAAAGCGGCACTCTGCGTCCTTACCATGCAGAGCTGAGACCTTCCAGCGAATTGATTTCAAATGGCTTTTTTAGT TTCTCCGCACCAAGAACCTTAATAAGGTACATCACTCAGGCCAAGGGCGACTTTATTGCTGGCCTGAATGGCTACATTGA TGACAAGGGCCTGACCCCGATAACCTTGCCCCATTGGTACGACTTTGGACACAGCCATACCTATTACCAATCCAAGAGCC GGATGACGACTCAGCGGGCCTTCAACGGGATGGCAATTCAGGGGCAGGTGGTCAAGAAATTCAGCCGCAATAAACATAAG CTCGCTGCCGAGGCCAACTGGTATCAAAGTTTGCCAGGGCCAATGCGGGGCTACATTCCACAGCTGCTGGGCTGTGATGA AAGCCCCGAGCTATTTGGCTACAGCATAGAGTATCTGCACCTGACAGCCTTGAATGAGCTCTACGTCTTCAGCCAGTTGC CGGCCTTTGCCTGGCGTAAGGTACTCAAAGCATGCTGCCAGTTCCTCAAGGACGCCAGCAGCTATTCAGTGGCCGATGCC CAAACCCTCAGTGGGCTTTTTATGGATAAGACCCTGAGCCGGCTTGAGGATTTCGCCAGTCAAAGCGGCATATCTGTGGC CCAGGAAAACCGTATCAATGGCGCCCTGCGGCCGTCTTTGCTGGAGCTGGCCCGGATAAGTCGCGAGTATTTGCCCAAAG ATAATGGCAGGCAACACCTGCTGCACGGTGACTTTTGTTTCAGCAATATTCTGTATGACTTTCGAACCTGTAATATCAAG GTCATAGACCCGCGAGGACTGGACGGTAACGACAAGCAAACCATCCACGGCAATGGCTTATACGACATTGCCAAGTTGGC ACACTCGGTATTGGGGCTCTATGACGCCATTATTGCCGGTTATTTTAAAGCCGAGCGGCTGGGGCAGAACCTCGACTTCA GTATTGCCATTACGCCCAGACGCGAGCAAATCATGGCCGACTTCGTCCGGCTGATGGCCAGCGAGTTCGCCGTCAGCGAA GCCGAGCTTTACGCCATGCAAATTCAGTTGTTCCTCTCCATGCTGCCACTCCACAGTGACAGACCAGACCGGCAGCTTGG ATTCATAGGTAACGCCTATCGACTCTATGACAGGCTGCTTGCCTGCACAGGAAATCCATCATGA
Upstream 100 bases:
>100_bases TTTTATATCGATGACAGGGCCATCAGACCGTCTGAATTCGCCCGCATGAGCCGGGCCGAAATTGAGCAACTTATCGAAGA CGACAAAGCATAGGACGTGC
Downstream 100 bases:
>100_bases TAGTGATCCCCATGGCGGGGCTAAGCTCCCGCTTTTTCAACGCTGGCTACACCCAGCCCAAATACATGCTCGACGCTGGC GGCATGCCACTGTTTGACCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 527; Mature: 527
Protein sequence:
>527_residues MYLITSAAMVASELQSEFGPLPPCFLPVGNKRLFHHQLALIPAGERTIITLPEGFTPGPYDSQSLKDYGVELLYLPPTLS LGESIVYALIQLEFADDEPLYILHGDTLFDSLPRQTDCLGLSQVEDNYNWAEFDAQSGTLRPYHAELRPSSELISNGFFS FSAPRTLIRYITQAKGDFIAGLNGYIDDKGLTPITLPHWYDFGHSHTYYQSKSRMTTQRAFNGMAIQGQVVKKFSRNKHK LAAEANWYQSLPGPMRGYIPQLLGCDESPELFGYSIEYLHLTALNELYVFSQLPAFAWRKVLKACCQFLKDASSYSVADA QTLSGLFMDKTLSRLEDFASQSGISVAQENRINGALRPSLLELARISREYLPKDNGRQHLLHGDFCFSNILYDFRTCNIK VIDPRGLDGNDKQTIHGNGLYDIAKLAHSVLGLYDAIIAGYFKAERLGQNLDFSIAITPRREQIMADFVRLMASEFAVSE AELYAMQIQLFLSMLPLHSDRPDRQLGFIGNAYRLYDRLLACTGNPS
Sequences:
>Translated_527_residues MYLITSAAMVASELQSEFGPLPPCFLPVGNKRLFHHQLALIPAGERTIITLPEGFTPGPYDSQSLKDYGVELLYLPPTLS LGESIVYALIQLEFADDEPLYILHGDTLFDSLPRQTDCLGLSQVEDNYNWAEFDAQSGTLRPYHAELRPSSELISNGFFS FSAPRTLIRYITQAKGDFIAGLNGYIDDKGLTPITLPHWYDFGHSHTYYQSKSRMTTQRAFNGMAIQGQVVKKFSRNKHK LAAEANWYQSLPGPMRGYIPQLLGCDESPELFGYSIEYLHLTALNELYVFSQLPAFAWRKVLKACCQFLKDASSYSVADA QTLSGLFMDKTLSRLEDFASQSGISVAQENRINGALRPSLLELARISREYLPKDNGRQHLLHGDFCFSNILYDFRTCNIK VIDPRGLDGNDKQTIHGNGLYDIAKLAHSVLGLYDAIIAGYFKAERLGQNLDFSIAITPRREQIMADFVRLMASEFAVSE AELYAMQIQLFLSMLPLHSDRPDRQLGFIGNAYRLYDRLLACTGNPS >Mature_527_residues MYLITSAAMVASELQSEFGPLPPCFLPVGNKRLFHHQLALIPAGERTIITLPEGFTPGPYDSQSLKDYGVELLYLPPTLS LGESIVYALIQLEFADDEPLYILHGDTLFDSLPRQTDCLGLSQVEDNYNWAEFDAQSGTLRPYHAELRPSSELISNGFFS FSAPRTLIRYITQAKGDFIAGLNGYIDDKGLTPITLPHWYDFGHSHTYYQSKSRMTTQRAFNGMAIQGQVVKKFSRNKHK LAAEANWYQSLPGPMRGYIPQLLGCDESPELFGYSIEYLHLTALNELYVFSQLPAFAWRKVLKACCQFLKDASSYSVADA QTLSGLFMDKTLSRLEDFASQSGISVAQENRINGALRPSLLELARISREYLPKDNGRQHLLHGDFCFSNILYDFRTCNIK VIDPRGLDGNDKQTIHGNGLYDIAKLAHSVLGLYDAIIAGYFKAERLGQNLDFSIAITPRREQIMADFVRLMASEFAVSE AELYAMQIQLFLSMLPLHSDRPDRQLGFIGNAYRLYDRLLACTGNPS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59222; Mature: 59222
Theoretical pI: Translated: 6.02; Mature: 6.02
Prosite motif: PS00109 PROTEIN_KINASE_TYR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYLITSAAMVASELQSEFGPLPPCFLPVGNKRLFHHQLALIPAGERTIITLPEGFTPGPY CEEEHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEEEEEEEECCCEEEEECCCCCCCCCC DSQSLKDYGVELLYLPPTLSLGESIVYALIQLEFADDEPLYILHGDTLFDSLPRQTDCLG CCCCHHHHCEEEEEECCCHHHHHHHHHHHHEEEECCCCCEEEEECCHHHHHCCCCCCCCC LSQVEDNYNWAEFDAQSGTLRPYHAELRPSSELISNGFFSFSAPRTLIRYITQAKGDFIA HHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEE GLNGYIDDKGLTPITLPHWYDFGHSHTYYQSKSRMTTQRAFNGMAIQGQVVKKFSRNKHK CCCCEECCCCCCCEECCCHHCCCCCCCEEHHHHHHHHHHHHCCCEEEHHHHHHHHCCCHH LAAEANWYQSLPGPMRGYIPQLLGCDESPELFGYSIEYLHLTALNELYVFSQLPAFAWRK EECCCCHHHCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEHHHHHHHHHHCHHHHHHH VLKACCQFLKDASSYSVADAQTLSGLFMDKTLSRLEDFASQSGISVAQENRINGALRPSL HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHH LELARISREYLPKDNGRQHLLHGDFCFSNILYDFRTCNIKVIDPRGLDGNDKQTIHGNGL HHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHEECEEEEECCCCCCCCCCCEEECCCH YDIAKLAHSVLGLYDAIIAGYFKAERLGQNLDFSIAITPRREQIMADFVRLMASEFAVSE HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH AELYAMQIQLFLSMLPLHSDRPDRQLGFIGNAYRLYDRLLACTGNPS HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC >Mature Secondary Structure MYLITSAAMVASELQSEFGPLPPCFLPVGNKRLFHHQLALIPAGERTIITLPEGFTPGPY CEEEHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEEEEEEEECCCEEEEECCCCCCCCCC DSQSLKDYGVELLYLPPTLSLGESIVYALIQLEFADDEPLYILHGDTLFDSLPRQTDCLG CCCCHHHHCEEEEEECCCHHHHHHHHHHHHEEEECCCCCEEEEECCHHHHHCCCCCCCCC LSQVEDNYNWAEFDAQSGTLRPYHAELRPSSELISNGFFSFSAPRTLIRYITQAKGDFIA HHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEE GLNGYIDDKGLTPITLPHWYDFGHSHTYYQSKSRMTTQRAFNGMAIQGQVVKKFSRNKHK CCCCEECCCCCCCEECCCHHCCCCCCCEEHHHHHHHHHHHHCCCEEEHHHHHHHHCCCHH LAAEANWYQSLPGPMRGYIPQLLGCDESPELFGYSIEYLHLTALNELYVFSQLPAFAWRK EECCCCHHHCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEHHHHHHHHHHCHHHHHHH VLKACCQFLKDASSYSVADAQTLSGLFMDKTLSRLEDFASQSGISVAQENRINGALRPSL HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHH LELARISREYLPKDNGRQHLLHGDFCFSNILYDFRTCNIKVIDPRGLDGNDKQTIHGNGL HHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHEECEEEEECCCCCCCCCCCEEECCCH YDIAKLAHSVLGLYDAIIAGYFKAERLGQNLDFSIAITPRREQIMADFVRLMASEFAVSE HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH AELYAMQIQLFLSMLPLHSDRPDRQLGFIGNAYRLYDRLLACTGNPS HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA