Click here to switch to the map view.

The map label for this gene is ygiV [H]

Identifier: 119773218

GI number: 119773218

Start: 81833

End: 82699

Strand: Direct

Name: ygiV [H]

Synonym: Sama_0076

Alternate gene names: 119773218

Gene position: 81833-82699 (Clockwise)

Preceding gene: 119773217

Following gene: 119773220

Centisome position: 1.9

GC content: 56.52

Gene sequence:

>867_bases
GTGCCGACTGGACTGGACCCAAGACTTGCAAGGGTGTGTGACTACATCAGCCGCCATCTGGATGAAGAACTCAGCCTCGA
GCGTTTGAGCCGGGTGGGACACTTGTCGCGATTTCACTTTCATCGGCTGTTTGCAGCCGGGCTTGGCATTCCGCTGGGGC
GCTTTGTGCAGCTGCAACGGCTGAAACGGGCGTCGTTCCGCCTTGGGTTCGAGCATTCATTGCGGGTGCTCGATATCGCG
TTGGAGGCCGGGTTCGATAGCGCCGAGGCCTTCAGCCGCGCTTTTAAGCGTGAGCTTGGTCTCAGCCCTTCGGCATTTCG
ACAAACACCTGACTGGGTGCTGTTGCACTCGGTGATGGAGCTTATCAAGGTGCCCCAGCGAGGGTTAACAGGAGCCAACA
TGGACATAAAATTGATTGAGATGCCGAGCCTGTCAGTGGCCTGGCTGGAACATCAGGGTAATCCGGCGCGGGTGCTGGAT
ACCAGTGCCCGTTTTATCGAATGGCGCAAGCAAACCGGGCTGTCACCTATAGCCAGCTCGCGCACCTTTGGCATTCCCAA
TGGCGACCCGGCCACCATGCCGGCCCAGGATTTTCGCTTTAAGGTAGCGGGCAGTATTAATGTGCCCGTACCGGCAAATC
CACAGGGCGTGGAAAATGGTGAAATCGCTGGTGGCCGCTACGCCGTTATCCGTCATCTTGGCAGCCAGGCGAATATGGAT
ACCAGCATCTACAGCTTTTTCCGCGACTGGCTGCCCCACAGCGGTGAAAACGTACGGGAAGCGCCACTGTTTTTCGAATA
CCTGAACTTTGTGCACCAGGTAGACGAGTGCGACCTTATCACAGACATTTATGTGCCACTGAACTAA

Upstream 100 bases:

>100_bases
CAAGGGTGCCTGGAGAAGTGAGAAGCGAGCGCAGAAAGTGAAGTCACTACAGAAGTCATCAAGTTCAACTGTAACGCTTG
AAAGTGCCCTGGCAGACACT

Downstream 100 bases:

>100_bases
GACCAAGGCCGCTCTGCGTCGCGAGCGTTTCAGCATTGCTATGCAGAGCGAATTTCAGAATAGGCAAAAACCCCGCTACA
GTGAGAAACCCTGAGCGGAG

Product: transcription activator, effector binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MPTGLDPRLARVCDYISRHLDEELSLERLSRVGHLSRFHFHRLFAAGLGIPLGRFVQLQRLKRASFRLGFEHSLRVLDIA
LEAGFDSAEAFSRAFKRELGLSPSAFRQTPDWVLLHSVMELIKVPQRGLTGANMDIKLIEMPSLSVAWLEHQGNPARVLD
TSARFIEWRKQTGLSPIASSRTFGIPNGDPATMPAQDFRFKVAGSINVPVPANPQGVENGEIAGGRYAVIRHLGSQANMD
TSIYSFFRDWLPHSGENVREAPLFFEYLNFVHQVDECDLITDIYVPLN

Sequences:

>Translated_288_residues
MPTGLDPRLARVCDYISRHLDEELSLERLSRVGHLSRFHFHRLFAAGLGIPLGRFVQLQRLKRASFRLGFEHSLRVLDIA
LEAGFDSAEAFSRAFKRELGLSPSAFRQTPDWVLLHSVMELIKVPQRGLTGANMDIKLIEMPSLSVAWLEHQGNPARVLD
TSARFIEWRKQTGLSPIASSRTFGIPNGDPATMPAQDFRFKVAGSINVPVPANPQGVENGEIAGGRYAVIRHLGSQANMD
TSIYSFFRDWLPHSGENVREAPLFFEYLNFVHQVDECDLITDIYVPLN
>Mature_287_residues
PTGLDPRLARVCDYISRHLDEELSLERLSRVGHLSRFHFHRLFAAGLGIPLGRFVQLQRLKRASFRLGFEHSLRVLDIAL
EAGFDSAEAFSRAFKRELGLSPSAFRQTPDWVLLHSVMELIKVPQRGLTGANMDIKLIEMPSLSVAWLEHQGNPARVLDT
SARFIEWRKQTGLSPIASSRTFGIPNGDPATMPAQDFRFKVAGSINVPVPANPQGVENGEIAGGRYAVIRHLGSQANMDT
SIYSFFRDWLPHSGENVREAPLFFEYLNFVHQVDECDLITDIYVPLN

Specific function: Represses expression of mcbR [H]

COG id: COG3449

COG function: function code L; DNA gyrase inhibitor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI48994918, Length=159, Percent_Identity=45.9119496855346, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1790857, Length=98, Percent_Identity=32.6530612244898, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind [H]

EC number: NA

Molecular weight: Translated: 32380; Mature: 32249

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTGLDPRLARVCDYISRHLDEELSLERLSRVGHLSRFHFHRLFAAGLGIPLGRFVQLQR
CCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LKRASFRLGFEHSLRVLDIALEAGFDSAEAFSRAFKRELGLSPSAFRQTPDWVLLHSVME
HHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHH
LIKVPQRGLTGANMDIKLIEMPSLSVAWLEHQGNPARVLDTSARFIEWRKQTGLSPIASS
HHHCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCEEEHHHHHHHHHHHHCCCCCCCCC
RTFGIPNGDPATMPAQDFRFKVAGSINVPVPANPQGVENGEIAGGRYAVIRHLGSQANMD
CCCCCCCCCCCCCCHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCH
TSIYSFFRDWLPHSGENVREAPLFFEYLNFVHQVDECDLITDIYVPLN
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
>Mature Secondary Structure 
PTGLDPRLARVCDYISRHLDEELSLERLSRVGHLSRFHFHRLFAAGLGIPLGRFVQLQR
CCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LKRASFRLGFEHSLRVLDIALEAGFDSAEAFSRAFKRELGLSPSAFRQTPDWVLLHSVME
HHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHH
LIKVPQRGLTGANMDIKLIEMPSLSVAWLEHQGNPARVLDTSARFIEWRKQTGLSPIASS
HHHCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCEEEHHHHHHHHHHHHCCCCCCCCC
RTFGIPNGDPATMPAQDFRFKVAGSINVPVPANPQGVENGEIAGGRYAVIRHLGSQANMD
CCCCCCCCCCCCCCHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCH
TSIYSFFRDWLPHSGENVREAPLFFEYLNFVHQVDECDLITDIYVPLN
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]