Click here to switch to the map view.

The map label for this gene is ydjR [C]

Identifier: 119773212

GI number: 119773212

Start: 77043

End: 77630

Strand: Reverse

Name: ydjR [C]

Synonym: Sama_0070

Alternate gene names: 119773212

Gene position: 77630-77043 (Counterclockwise)

Preceding gene: 119773213

Following gene: 119773202

Centisome position: 1.8

GC content: 56.12

Gene sequence:

>588_bases
ATGCCGATACATCTGGTGGCAGCCAAAGATTTCGTGACCAATGATTGGGCCGGTGGCAGCACAACTCAGCTGCTTATCCA
CCCCAAAGGCAGCAGTTTGGCTGCCCGTGACTTTGAATTCCGTCTAAGCTGTGCCCGGGTTGAACAATCCGGTCAATTCA
GTGATTTCAGTGGTTACGATCGCCTGCTACTTGTATTGGAAGGTGCCATGAAGTTGAGTGGCAACGCTCTGTCCGAAGCC
CGGGTTCAGCACGCCGATAGCAGTCCCTGGGCCTTCGATGGTGGTTTGAGTGTGCATGCCGAACTGACAACGGCTGTGGT
GGAAGACTTTAACCTGTTTGTGCCCAAGGGAAGACTGAAATTGGCAAGCCGGCAACAACTGGCTGAACATCAGCGCTGGC
ATCAGGCTGCCGAAGCGGGCGCGAGTGTTTACGGGGTGTTCCTGCGCAGTGGCCAGGTCAGTATCGGTGACATCCAGCTG
AGCAGCGACCATCCGCTGATAATTTCCTCTACGCCGCTGAATCTACTCGCCGAGGCACCAAGCGATTTGGTGGCGTTCGC
CATTGGCTGCCGCTTTCCGCAGCCCTGA

Upstream 100 bases:

>100_bases
GCTACGGGCTGGAATGGGCCAGGAAGCAGGGGCTCGACATTCACGCCAGCTGTTGGTACGTTCAAAAATTCCTCTAAGAC
ATGCGGTTGAAGGAAACCCA

Downstream 100 bases:

>100_bases
TATCTCTCCCGGGACCAAGGAATTGGTCTTGTGTTGGTTCTTCTCAATGATATCGACGTATCTGGCGGAATTTTTGCTGC
CAGTAGCCGTTATCGAGGGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MPIHLVAAKDFVTNDWAGGSTTQLLIHPKGSSLAARDFEFRLSCARVEQSGQFSDFSGYDRLLLVLEGAMKLSGNALSEA
RVQHADSSPWAFDGGLSVHAELTTAVVEDFNLFVPKGRLKLASRQQLAEHQRWHQAAEAGASVYGVFLRSGQVSIGDIQL
SSDHPLIISSTPLNLLAEAPSDLVAFAIGCRFPQP

Sequences:

>Translated_195_residues
MPIHLVAAKDFVTNDWAGGSTTQLLIHPKGSSLAARDFEFRLSCARVEQSGQFSDFSGYDRLLLVLEGAMKLSGNALSEA
RVQHADSSPWAFDGGLSVHAELTTAVVEDFNLFVPKGRLKLASRQQLAEHQRWHQAAEAGASVYGVFLRSGQVSIGDIQL
SSDHPLIISSTPLNLLAEAPSDLVAFAIGCRFPQP
>Mature_194_residues
PIHLVAAKDFVTNDWAGGSTTQLLIHPKGSSLAARDFEFRLSCARVEQSGQFSDFSGYDRLLLVLEGAMKLSGNALSEAR
VQHADSSPWAFDGGLSVHAELTTAVVEDFNLFVPKGRLKLASRQQLAEHQRWHQAAEAGASVYGVFLRSGQVSIGDIQLS
SDHPLIISSTPLNLLAEAPSDLVAFAIGCRFPQP

Specific function: Unknown

COG id: COG3758

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21044; Mature: 20913

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIHLVAAKDFVTNDWAGGSTTQLLIHPKGSSLAARDFEFRLSCARVEQSGQFSDFSGYD
CCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCEECCCEEEEEEEHHHCCCCCCCCCCHH
RLLLVLEGAMKLSGNALSEARVQHADSSPWAFDGGLSVHAELTTAVVEDFNLFVPKGRLK
HEEHEEHHHHHCCCCCHHHHHHHCCCCCCCEECCCEEEEHHHHHHHHHHCEEECCCCCEE
LASRQQLAEHQRWHQAAEAGASVYGVFLRSGQVSIGDIQLSSDHPLIISSTPLNLLAEAP
HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEECCCCCEEEECCCHHHHHCCC
SDLVAFAIGCRFPQP
HHHEEHEECCCCCCC
>Mature Secondary Structure 
PIHLVAAKDFVTNDWAGGSTTQLLIHPKGSSLAARDFEFRLSCARVEQSGQFSDFSGYD
CEEEEEECCCCCCCCCCCCEEEEEEEECCCCCEECCCEEEEEEEHHHCCCCCCCCCCHH
RLLLVLEGAMKLSGNALSEARVQHADSSPWAFDGGLSVHAELTTAVVEDFNLFVPKGRLK
HEEHEEHHHHHCCCCCHHHHHHHCCCCCCCEECCCEEEEHHHHHHHHHHCEEECCCCCEE
LASRQQLAEHQRWHQAAEAGASVYGVFLRSGQVSIGDIQLSSDHPLIISSTPLNLLAEAP
HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEECCCCCEEEECCCHHHHHCCC
SDLVAFAIGCRFPQP
HHHEEHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA