Click here to switch to the map view.

The map label for this gene is secB

Identifier: 119773204

GI number: 119773204

Start: 67576

End: 68055

Strand: Direct

Name: secB

Synonym: Sama_0062

Alternate gene names: 119773204

Gene position: 67576-68055 (Clockwise)

Preceding gene: 119773203

Following gene: 119773205

Centisome position: 1.57

GC content: 52.29

Gene sequence:

>480_bases
ATGGCTGAAGTAGCAAATAACGAACAACAAGCCCCACAGTTCAACATTCAACGTATTTACACCAAGGATGTGTCTTTTGA
GACTCCAAACAGCCCGGCTGTATTCCAGAAAGAATGGAATCCAGAAGTGAAGCTGGATCTGGATACCCGCAGCACCAAGC
TGGCTGATGACATCTTTGAAGTGGTTCTGTCTGTGACAGTGACTGCCAAAAACGGCGACGAAACCGCCTTCCTGTGTGAA
GTACAACAAGCCGGTATTTTCCACATCGGTGGTTTGACCGAGCCGCAACTGGCGCATTCTCTGGGTGCATACTGCCCCAA
CATCCTGTTCCCATATGCCCGTGAATCTGTGGCCAGCATGGTTTCCCGCGGTACCTTCCCTCAGCTGAACCTGGCACCGG
TAAACTTTGATGCTCTGTTTGCCCAGTACGTGCAACAGCGCGCCGCTGCTGCGCAGCCGACTGAAGAAGCCAACGCGTAA

Upstream 100 bases:

>100_bases
ACGGTACTGAGATCCTTTGCGGCCTCAAAAGCCCAGCCCATAACTATATGGCTTTCAATGAAAAAGCCGACTTAACAGAT
TGATTGATAGGTAGGAAATT

Downstream 100 bases:

>100_bases
CAAGCGATGAAAGACACTGCCGATATTACGGTACTGGGGGCGGGCTCTTATGGCACCGCCCTTGCCATTTCTTTGGCCAG
TAACGGACACAAGACTTTGC

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MAEVANNEQQAPQFNIQRIYTKDVSFETPNSPAVFQKEWNPEVKLDLDTRSTKLADDIFEVVLSVTVTAKNGDETAFLCE
VQQAGIFHIGGLTEPQLAHSLGAYCPNILFPYARESVASMVSRGTFPQLNLAPVNFDALFAQYVQQRAAAAQPTEEANA

Sequences:

>Translated_159_residues
MAEVANNEQQAPQFNIQRIYTKDVSFETPNSPAVFQKEWNPEVKLDLDTRSTKLADDIFEVVLSVTVTAKNGDETAFLCE
VQQAGIFHIGGLTEPQLAHSLGAYCPNILFPYARESVASMVSRGTFPQLNLAPVNFDALFAQYVQQRAAAAQPTEEANA
>Mature_158_residues
AEVANNEQQAPQFNIQRIYTKDVSFETPNSPAVFQKEWNPEVKLDLDTRSTKLADDIFEVVLSVTVTAKNGDETAFLCEV
QQAGIFHIGGLTEPQLAHSLGAYCPNILFPYARESVASMVSRGTFPQLNLAPVNFDALFAQYVQQRAAAAQPTEEANA

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=156, Percent_Identity=70.5128205128205, Blast_Score=227, Evalue=3e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_SHEAM (A1S1L8)

Other databases:

- EMBL:   CP000507
- RefSeq:   YP_925944.1
- ProteinModelPortal:   A1S1L8
- SMR:   A1S1L8
- STRING:   A1S1L8
- GeneID:   4602319
- GenomeReviews:   CP000507_GR
- KEGG:   saz:Sama_0062
- NMPDR:   fig|326297.7.peg.57
- eggNOG:   COG1952
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- PhylomeDB:   A1S1L8
- ProtClustDB:   PRK05751
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 17495; Mature: 17363

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEVANNEQQAPQFNIQRIYTKDVSFETPNSPAVFQKEWNPEVKLDLDTRSTKLADDIFE
CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCEEEEECCCCHHHHHHHHH
VVLSVTVTAKNGDETAFLCEVQQAGIFHIGGLTEPQLAHSLGAYCPNILFPYARESVASM
HHHHHEEEECCCCCEEEEEEECCCCEEEECCCCCHHHHHHHHHHCCHHHCHHHHHHHHHH
VSRGTFPQLNLAPVNFDALFAQYVQQRAAAAQPTEEANA
HHCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
AEVANNEQQAPQFNIQRIYTKDVSFETPNSPAVFQKEWNPEVKLDLDTRSTKLADDIFE
CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCEEEEECCCCHHHHHHHHH
VVLSVTVTAKNGDETAFLCEVQQAGIFHIGGLTEPQLAHSLGAYCPNILFPYARESVASM
HHHHHEEEECCCCCEEEEEEECCCCEEEECCCCCHHHHHHHHHHCCHHHCHHHHHHHHHH
VSRGTFPQLNLAPVNFDALFAQYVQQRAAAAQPTEEANA
HHCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA