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The map label for this gene is ctpA [H]

Identifier: 119773200

GI number: 119773200

Start: 62780

End: 63976

Strand: Reverse

Name: ctpA [H]

Synonym: Sama_0058

Alternate gene names: 119773200

Gene position: 63976-62780 (Counterclockwise)

Preceding gene: 119773201

Following gene: 119773199

Centisome position: 1.49

GC content: 51.04

Gene sequence:

>1197_bases
ATGAAGCAGTTCATCCGTTATCTCGGCGCGACGGTGTTCGGTTTGGCGCTGGGCATTTCCGTAAGCCTCTCCGGGCAGGA
AAACGCCCGCTCGGTGCTCAGCCAATATGACTACCCTCTGCTGGTAGACATTATGGATACCATTGAGACCTACTATGTGA
ATCAGATAAGCAGGGATGAACTTATCGAAGGTGCCATCGAGGGCATGTTCAAAAAGCTCGACCCCTACTCGGGCTACCTG
TCTCATCAGGATCTGATCAATATCCGCGATACAAACCGGGGGGAATATTTCGGCTACGGCTTCGAAATCGCGTCTGACGA
TAACCTCATCCGTATTGTGTCACCTTTTTCCGACTCTCCCGCTGACAAAGCCGGCATTATCGCTGGCGATACCATTATCG
CCGTCAACTCGCACCAAGTGGCTGACATGGACCTCAATGCCGTGCTCGCTGAAATCCGCTACCACAGTCTGAATAACCTG
CCGCTAACCCTGACTCTGGAACACAGTGACAAAATCAGCTATCAGGTCACCCTGAGGCCTGCGACCATTTCAGTTGCGTC
AGTTCAGGGACGTTGGTTAGAGGGTGAAATTGCCTACGTGCGGCTCACCAGCTTCCAGGACAACACCACAGAAGATCTGG
TAAAGCAGCTCAGCCAATGGAATTCGCCCAAGGGACTTATCCTGGATTTACGCAATAACCCGGGTGGCCTGCTGGACCAA
GCCATCAGAATTGCGGACCTGTTTCTGGCAAAGGGGCGCATAGTCTCAACCTCAGGACGCTACTTCGATGCGAATTCTGA
CTACTTCGCCTCGCCCCAAACCCTGATGACCAATGTGCCCATGATGGTGCTTATCAATAAGGGGTCTGCCTCGGCTTCGG
AAGTGCTTGCTGCGGCGCTGCAGGAAAATGGCAGGGCTCTGCTTATCGGTGAGACCAGCTTTGGCAAAGGCACAGTACAA
AGTCTTATCCCCACCCTTAACATGGACAGTGCAATAAAGTTGACCATAGCCCATTACAACACCCCAAAAGGCCATGATAT
TCATGCCAAAGGGATAGAGCCTGATATTAAAATTGCCGCTCAGAATACTGTTAAAGATGCGGGTGATATGCCTATAATCG
GCTCAGAACAACGTAAAACACAACTTGAAGATCAGACCTTGGCATCGGCCATCGCCTGGATTGAAAACCAAAAATAA

Upstream 100 bases:

>100_bases
GCCTGGCCTATACTTTGAAATAAGGCACAAGGGGCAGGCTGTCGACCCGGCAAACTACTGCAGGCGTTGATATCAGGCTC
CCACTGAACAGGGGGCCTTT

Downstream 100 bases:

>100_bases
CTACATAATAACGATAACTTAGTGCGCTATTTGATTGGTTTGCTGCTTGCAGCAGGTATGTTTACAGCCCATGGGGCACA
ACTGGCTATCATCATCGACG

Product: C-terminal processing peptidase

Products: NA

Alternate protein names: C-terminal-processing protease [H]

Number of amino acids: Translated: 398; Mature: 398

Protein sequence:

>398_residues
MKQFIRYLGATVFGLALGISVSLSGQENARSVLSQYDYPLLVDIMDTIETYYVNQISRDELIEGAIEGMFKKLDPYSGYL
SHQDLINIRDTNRGEYFGYGFEIASDDNLIRIVSPFSDSPADKAGIIAGDTIIAVNSHQVADMDLNAVLAEIRYHSLNNL
PLTLTLEHSDKISYQVTLRPATISVASVQGRWLEGEIAYVRLTSFQDNTTEDLVKQLSQWNSPKGLILDLRNNPGGLLDQ
AIRIADLFLAKGRIVSTSGRYFDANSDYFASPQTLMTNVPMMVLINKGSASASEVLAAALQENGRALLIGETSFGKGTVQ
SLIPTLNMDSAIKLTIAHYNTPKGHDIHAKGIEPDIKIAAQNTVKDAGDMPIIGSEQRKTQLEDQTLASAIAWIENQK

Sequences:

>Translated_398_residues
MKQFIRYLGATVFGLALGISVSLSGQENARSVLSQYDYPLLVDIMDTIETYYVNQISRDELIEGAIEGMFKKLDPYSGYL
SHQDLINIRDTNRGEYFGYGFEIASDDNLIRIVSPFSDSPADKAGIIAGDTIIAVNSHQVADMDLNAVLAEIRYHSLNNL
PLTLTLEHSDKISYQVTLRPATISVASVQGRWLEGEIAYVRLTSFQDNTTEDLVKQLSQWNSPKGLILDLRNNPGGLLDQ
AIRIADLFLAKGRIVSTSGRYFDANSDYFASPQTLMTNVPMMVLINKGSASASEVLAAALQENGRALLIGETSFGKGTVQ
SLIPTLNMDSAIKLTIAHYNTPKGHDIHAKGIEPDIKIAAQNTVKDAGDMPIIGSEQRKTQLEDQTLASAIAWIENQK
>Mature_398_residues
MKQFIRYLGATVFGLALGISVSLSGQENARSVLSQYDYPLLVDIMDTIETYYVNQISRDELIEGAIEGMFKKLDPYSGYL
SHQDLINIRDTNRGEYFGYGFEIASDDNLIRIVSPFSDSPADKAGIIAGDTIIAVNSHQVADMDLNAVLAEIRYHSLNNL
PLTLTLEHSDKISYQVTLRPATISVASVQGRWLEGEIAYVRLTSFQDNTTEDLVKQLSQWNSPKGLILDLRNNPGGLLDQ
AIRIADLFLAKGRIVSTSGRYFDANSDYFASPQTLMTNVPMMVLINKGSASASEVLAAALQENGRALLIGETSFGKGTVQ
SLIPTLNMDSAIKLTIAHYNTPKGHDIHAKGIEPDIKIAAQNTVKDAGDMPIIGSEQRKTQLEDQTLASAIAWIENQK

Specific function: Involved in protection of the bacterium from thermal and osmotic stresses (Potential) [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=343, Percent_Identity=27.1137026239067, Blast_Score=102, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 43663; Mature: 43663

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQFIRYLGATVFGLALGISVSLSGQENARSVLSQYDYPLLVDIMDTIETYYVNQISRDE
CHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCHHH
LIEGAIEGMFKKLDPYSGYLSHQDLINIRDTNRGEYFGYGFEIASDDNLIRIVSPFSDSP
HHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEECCCCCCC
ADKAGIIAGDTIIAVNSHQVADMDLNAVLAEIRYHSLNNLPLTLTLEHSDKISYQVTLRP
CCCCCEEECCEEEEECCCEEECCHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEEC
ATISVASVQGRWLEGEIAYVRLTSFQDNTTEDLVKQLSQWNSPKGLILDLRNNPGGLLDQ
CEEEEEEECCEEECCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHH
AIRIADLFLAKGRIVSTSGRYFDANSDYFASPQTLMTNVPMMVLINKGSASASEVLAAAL
HHHHHHHHHHCCEEEECCCCEEECCCCCCCCCHHHHHCCCEEEEEECCCCCHHHHHHHHH
QENGRALLIGETSFGKGTVQSLIPTLNMDSAIKLTIAHYNTPKGHDIHAKGIEPDIKIAA
HCCCCEEEEECCCCCCCHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEECCCCCCEEEEE
QNTVKDAGDMPIIGSEQRKTQLEDQTLASAIAWIENQK
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKQFIRYLGATVFGLALGISVSLSGQENARSVLSQYDYPLLVDIMDTIETYYVNQISRDE
CHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCHHH
LIEGAIEGMFKKLDPYSGYLSHQDLINIRDTNRGEYFGYGFEIASDDNLIRIVSPFSDSP
HHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCCEEEEECCCCCCC
ADKAGIIAGDTIIAVNSHQVADMDLNAVLAEIRYHSLNNLPLTLTLEHSDKISYQVTLRP
CCCCCEEECCEEEEECCCEEECCHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEEC
ATISVASVQGRWLEGEIAYVRLTSFQDNTTEDLVKQLSQWNSPKGLILDLRNNPGGLLDQ
CEEEEEEECCEEECCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHH
AIRIADLFLAKGRIVSTSGRYFDANSDYFASPQTLMTNVPMMVLINKGSASASEVLAAAL
HHHHHHHHHHCCEEEECCCCEEECCCCCCCCCHHHHHCCCEEEEEECCCCCHHHHHHHHH
QENGRALLIGETSFGKGTVQSLIPTLNMDSAIKLTIAHYNTPKGHDIHAKGIEPDIKIAA
HCCCCEEEEECCCCCCCHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEECCCCCCEEEEE
QNTVKDAGDMPIIGSEQRKTQLEDQTLASAIAWIENQK
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141685 [H]