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The map label for this gene is rnpA

Identifier: 119773153

GI number: 119773153

Start: 9802

End: 10158

Strand: Reverse

Name: rnpA

Synonym: Sama_0011

Alternate gene names: 119773153

Gene position: 10158-9802 (Counterclockwise)

Preceding gene: 119773154

Following gene: 119773152

Centisome position: 0.24

GC content: 48.18

Gene sequence:

>357_bases
GTGACTAGCTACACCTTTACGCGGGAGTTACGTTTGTTAACTCCCGCGCAATTTCAAGCTGTTTTCACCAATCCTGTCAA
AGCATCTTCTGCTGAAATCACTTTGCTTGCTACTCCCAACACTCAGGAACATCCTCGAGTGGGTTTAACCGTGCCCAAAA
AGCAGGTTAAACGCGCCCATGACCGCAACCGGGTTAAACGGGTTATTCGGGAAAGCTTCAGAATGCATCAACACGACCTG
CCTTCATTGGACATAGTTGTGTTGGTTCGCAAAGGGGTTATGGATTTGGAGAATCCCGAACTTCACAAGCTGGTAGATAA
GCTATGGCGCAAACTCAGTCGCCGTTTCAATGGCTAG

Upstream 100 bases:

>100_bases
TTCCGCGCTCGCATGGCTACAGCTAACGGCCGCAAGGTACTGGCTCGTCGCCGTGCCAAGGGTCGCGCTCGTCTGTCTGC
CTAATCAGGTCGACATCTAG

Downstream 100 bases:

>100_bases
CCACCAAGCTTATTCGCGGCTACCAAATATTTATCAGCCCAATCCTTGGGCCTAAGTGTCGTTTTCAGCCAACTTGCTCA
CATTACGCCATTGAAGCCAT

Product: ribonuclease P

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 118; Mature: 117

Protein sequence:

>118_residues
MTSYTFTRELRLLTPAQFQAVFTNPVKASSAEITLLATPNTQEHPRVGLTVPKKQVKRAHDRNRVKRVIRESFRMHQHDL
PSLDIVVLVRKGVMDLENPELHKLVDKLWRKLSRRFNG

Sequences:

>Translated_118_residues
MTSYTFTRELRLLTPAQFQAVFTNPVKASSAEITLLATPNTQEHPRVGLTVPKKQVKRAHDRNRVKRVIRESFRMHQHDL
PSLDIVVLVRKGVMDLENPELHKLVDKLWRKLSRRFNG
>Mature_117_residues
TSYTFTRELRLLTPAQFQAVFTNPVKASSAEITLLATPNTQEHPRVGLTVPKKQVKRAHDRNRVKRVIRESFRMHQHDLP
SLDIVVLVRKGVMDLENPELHKLVDKLWRKLSRRFNG

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

Organism=Escherichia coli, GI1790139, Length=118, Percent_Identity=53.3898305084746, Blast_Score=135, Evalue=1e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_SHEAM (A1S1G7)

Other databases:

- EMBL:   CP000507
- RefSeq:   YP_925893.1
- ProteinModelPortal:   A1S1G7
- SMR:   A1S1G7
- STRING:   A1S1G7
- GeneID:   4602268
- GenomeReviews:   CP000507_GR
- KEGG:   saz:Sama_0011
- eggNOG:   COG0594
- HOGENOM:   HBG728160
- OMA:   LVIGKKS
- PhylomeDB:   A1S1G7
- ProtClustDB:   PRK01732
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 13751; Mature: 13620

Theoretical pI: Translated: 11.57; Mature: 11.57

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSYTFTRELRLLTPAQFQAVFTNPVKASSAEITLLATPNTQEHPRVGLTVPKKQVKRAH
CCCCCCHHHHEECCCHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH
DRNRVKRVIRESFRMHQHDLPSLDIVVLVRKGVMDLENPELHKLVDKLWRKLSRRFNG
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TSYTFTRELRLLTPAQFQAVFTNPVKASSAEITLLATPNTQEHPRVGLTVPKKQVKRAH
CCCCCHHHHEECCCHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH
DRNRVKRVIRESFRMHQHDLPSLDIVVLVRKGVMDLENPELHKLVDKLWRKLSRRFNG
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA