| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is yqiG [H]
Identifier: 119773149
GI number: 119773149
Start: 5295
End: 6401
Strand: Direct
Name: yqiG [H]
Synonym: Sama_0007
Alternate gene names: 119773149
Gene position: 5295-6401 (Clockwise)
Preceding gene: 119773148
Following gene: 119773155
Centisome position: 0.12
GC content: 54.74
Gene sequence:
>1107_bases ATGCGTCAGGCGTTAAATTCGGGGTTTCAATTTGCCAAAGCGGGTGTGCGGCTGAAGAATCGTTCCGTGCTTGCTCCGCT GACTCATAATATGAGCGATTCCCATGGCAACCCGAGCCCGGCGGAACTGGATTGGCTTGAGCATTGTGCCAACGGCGGTT TTGGTCTCCTGATTGCGGCGGCAACTCAGGTGTGGCCGGGTGGTCGTTGTTGGCAGGGGCAGCCCGCTTTGATGACAGAC CTGCAGCAACAAGCATATAGCCGTTTTGCCGAGGCGACCCGGGCCCATGGTGCTTTGGCTCTGGTACAACTTCACCACGG TGGCGTGCGTGCCGCGCCTGCGCTGAACGGTACTGCGCCGGTTGGACCAAGCTCCGAAGCACCGGACAGCCGTTATCCGT TGGGCGTGACAGAACTTGATGAAGATGCAATTCAACAACTTATAGGTGCCTTTGTTACCGCAGCTGAGCGGGCGTATCGG GCAGGGCTTGACGGGGTTGAGCTGCATGCCGCGCATTACTATTTGCTCTGCAACTTTTTAAATCCCGTGCTTAACCGGCG TACCGACCGTTGGGGCGGCAGTGTTGAAAACCGTACCCGGATCCTGATTGAGATTATCCGGGGTATCCGGCAGCAATTGC CCCGTCAGTTTTTGGTGGGGGTGAGGTTATCGCCCGAAAATTACGCCAATGTGGTCGGTATAGAGCTTCAAAATCAACTT GCAGTTGCAAATTTACTCGCGGCGGAAGATATCGACTATGTGCATTTTTCCATGGGGGACAGTTTTAAGCTCGCCAATGG TAAAAATACGGCGCTGCTCAGCGAAGTGATAAATGCCCTCACCGGGAAAACCACGCTGATGATGGCCGGTAACATCCGTG ATGGCGAAGCGGCAGAAAGGGTGCTCAGTGCCGGAGCCGATCTGGTCGCGATTGGCACCTCAGCTCTTGGCAACCCGGAT TGGATTTACAAGGTAACAAACGGGGTACCGCTGGTGACCCCTCCATTTGCAGATACCTTGTTGCAGGCTCACGGTTTTAA TGAAGCGGGAATCACTTATCTTGGCGCGGTTCCAGGATTGGTGGTAATTTCCAAACCCAAAACGTGA
Upstream 100 bases:
>100_bases CAGACGGTAAGGGGCTGGCGGCTGCTTGTTCACAATGCTTCCGATAATATTTAATCAATCGATATGAGTTATGGTGTCAC CTGTTTTGCTGGAGAGACAA
Downstream 100 bases:
>100_bases GAACCCGATATATCAGAGGCTGTTTGTTGGTGGGTGCGATCACATAAAAAAACGCGACTGCCTTTGTGCGACAATCGCGT TTTATCCTCTGCAAAGCCGC
Product: oxidoreductase, FAD/FMN-binding
Products: NADP; Cytotoxic compound [C]
Alternate protein names: NA
Number of amino acids: Translated: 368; Mature: 368
Protein sequence:
>368_residues MRQALNSGFQFAKAGVRLKNRSVLAPLTHNMSDSHGNPSPAELDWLEHCANGGFGLLIAAATQVWPGGRCWQGQPALMTD LQQQAYSRFAEATRAHGALALVQLHHGGVRAAPALNGTAPVGPSSEAPDSRYPLGVTELDEDAIQQLIGAFVTAAERAYR AGLDGVELHAAHYYLLCNFLNPVLNRRTDRWGGSVENRTRILIEIIRGIRQQLPRQFLVGVRLSPENYANVVGIELQNQL AVANLLAAEDIDYVHFSMGDSFKLANGKNTALLSEVINALTGKTTLMMAGNIRDGEAAERVLSAGADLVAIGTSALGNPD WIYKVTNGVPLVTPPFADTLLQAHGFNEAGITYLGAVPGLVVISKPKT
Sequences:
>Translated_368_residues MRQALNSGFQFAKAGVRLKNRSVLAPLTHNMSDSHGNPSPAELDWLEHCANGGFGLLIAAATQVWPGGRCWQGQPALMTD LQQQAYSRFAEATRAHGALALVQLHHGGVRAAPALNGTAPVGPSSEAPDSRYPLGVTELDEDAIQQLIGAFVTAAERAYR AGLDGVELHAAHYYLLCNFLNPVLNRRTDRWGGSVENRTRILIEIIRGIRQQLPRQFLVGVRLSPENYANVVGIELQNQL AVANLLAAEDIDYVHFSMGDSFKLANGKNTALLSEVINALTGKTTLMMAGNIRDGEAAERVLSAGADLVAIGTSALGNPD WIYKVTNGVPLVTPPFADTLLQAHGFNEAGITYLGAVPGLVVISKPKT >Mature_368_residues MRQALNSGFQFAKAGVRLKNRSVLAPLTHNMSDSHGNPSPAELDWLEHCANGGFGLLIAAATQVWPGGRCWQGQPALMTD LQQQAYSRFAEATRAHGALALVQLHHGGVRAAPALNGTAPVGPSSEAPDSRYPLGVTELDEDAIQQLIGAFVTAAERAYR AGLDGVELHAAHYYLLCNFLNPVLNRRTDRWGGSVENRTRILIEIIRGIRQQLPRQFLVGVRLSPENYANVVGIELQNQL AVANLLAAEDIDYVHFSMGDSFKLANGKNTALLSEVINALTGKTTLMMAGNIRDGEAAERVLSAGADLVAIGTSALGNPD WIYKVTNGVPLVTPPFADTLLQAHGFNEAGITYLGAVPGLVVISKPKT
Specific function: Unknown
COG id: COG1902
COG function: function code C; NADH:flavin oxidoreductases, Old Yellow Enzyme family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the NADH:flavin oxidoreductase/NADH oxidase family [H]
Homologues:
Organism=Escherichia coli, GI1787939, Length=338, Percent_Identity=31.0650887573964, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1789463, Length=299, Percent_Identity=28.4280936454849, Blast_Score=87, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17540738, Length=346, Percent_Identity=26.878612716763, Blast_Score=132, Evalue=4e-31, Organism=Caenorhabditis elegans, GI17559802, Length=372, Percent_Identity=28.494623655914, Blast_Score=129, Evalue=2e-30, Organism=Caenorhabditis elegans, GI17565138, Length=338, Percent_Identity=29.2899408284024, Blast_Score=127, Evalue=6e-30, Organism=Caenorhabditis elegans, GI72001454, Length=345, Percent_Identity=28.1159420289855, Blast_Score=124, Evalue=5e-29, Organism=Caenorhabditis elegans, GI17564188, Length=349, Percent_Identity=27.7936962750716, Blast_Score=124, Evalue=7e-29, Organism=Caenorhabditis elegans, GI17559804, Length=349, Percent_Identity=27.2206303724928, Blast_Score=123, Evalue=2e-28, Organism=Caenorhabditis elegans, GI17566914, Length=263, Percent_Identity=30.0380228136882, Blast_Score=115, Evalue=5e-26, Organism=Caenorhabditis elegans, GI17566916, Length=227, Percent_Identity=28.1938325991189, Blast_Score=72, Evalue=6e-13, Organism=Saccharomyces cerevisiae, GI6325086, Length=354, Percent_Identity=26.5536723163842, Blast_Score=91, Evalue=3e-19, Organism=Saccharomyces cerevisiae, GI6321973, Length=360, Percent_Identity=27.2222222222222, Blast_Score=87, Evalue=4e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR001155 [H]
Pfam domain/function: PF00724 Oxidored_FMN [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 39385; Mature: 39385
Theoretical pI: Translated: 6.86; Mature: 6.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQALNSGFQFAKAGVRLKNRSVLAPLTHNMSDSHGNPSPAELDWLEHCANGGFGLLIAA CCCHHHHHHHHHHHCCEECCCCEECHHHCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEE ATQVWPGGRCWQGQPALMTDLQQQAYSRFAEATRAHGALALVQLHHGGVRAAPALNGTAP HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEECCCCCCCCC VGPSSEAPDSRYPLGVTELDEDAIQQLIGAFVTAAERAYRAGLDGVELHAAHYYLLCNFL CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHH NPVLNRRTDRWGGSVENRTRILIEIIRGIRQQLPRQFLVGVRLSPENYANVVGIELQNQL HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHEEEECCCCCCEEEEEEEHHHH AVANLLAAEDIDYVHFSMGDSFKLANGKNTALLSEVINALTGKTTLMMAGNIRDGEAAER HHHHHHHHCCCCEEEEECCCCEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHH VLSAGADLVAIGTSALGNPDWIYKVTNGVPLVTPPFADTLLQAHGFNEAGITYLGAVPGL HHHCCCCEEEECCCCCCCCCEEEEECCCCCEECCCHHHHHHHHCCCCCCCCEEEECCCCE VVISKPKT EEEECCCC >Mature Secondary Structure MRQALNSGFQFAKAGVRLKNRSVLAPLTHNMSDSHGNPSPAELDWLEHCANGGFGLLIAA CCCHHHHHHHHHHHCCEECCCCEECHHHCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEE ATQVWPGGRCWQGQPALMTDLQQQAYSRFAEATRAHGALALVQLHHGGVRAAPALNGTAP HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEECCCCCCCCC VGPSSEAPDSRYPLGVTELDEDAIQQLIGAFVTAAERAYRAGLDGVELHAAHYYLLCNFL CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHH NPVLNRRTDRWGGSVENRTRILIEIIRGIRQQLPRQFLVGVRLSPENYANVVGIELQNQL HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHEEEECCCCCCEEEEEEEHHHH AVANLLAAEDIDYVHFSMGDSFKLANGKNTALLSEVINALTGKTTLMMAGNIRDGEAAER HHHHHHHHCCCCEEEEECCCCEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHH VLSAGADLVAIGTSALGNPDWIYKVTNGVPLVTPPFADTLLQAHGFNEAGITYLGAVPGL HHHCCCCEEEECCCCCCCCCEEEEECCCCCEECCCHHHHHHHHCCCCCCCCEEEECCCCE VVISKPKT EEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: FMN. [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NADPH; N-ethylmaleimide [C]
Specific reaction: NADPH + N-ethylmaleimide = NADP + Cytotoxic compound [C]
General reaction: Reduction [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]