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The map label for this gene is jag [H]

Identifier: 119718913

GI number: 119718913

Start: 4982939

End: 4983517

Strand: Reverse

Name: jag [H]

Synonym: Noca_4696

Alternate gene names: 119718913

Gene position: 4983517-4982939 (Counterclockwise)

Preceding gene: 119718914

Following gene: 119718912

Centisome position: 99.95

GC content: 73.58

Gene sequence:

>579_bases
GTGAGTGAGGACGCAGTGAGCGACGAGACCACGCAGGCCGGCGACATCGCCGTGGACGCGGCGGGCGGTCCGGAGCCGGC
CGACGCGGACGATTCCGGCACGGGCGAGTCGGGCGGCTCCCGGGTGGAGCAGCTGGAGCAGGAAGGCGACATCGCCGCCG
ATTACCTCGAGGAGCTCCTCGACATCGCCGACCTGGACGGCGACCTGGACATGGACGTGGAGGGGGACCGGGCCGCGGTG
TCGATCGTGGGCGCCGACCTCGCTCAGCTCGTCGGCGCGCGGGGTGAGGTGCTCGACGCGCTCCAGGAGCTGACCCGGCT
GGCGGTGTACCGCGAGACCGGCGAGCGCTCCCGGCTGATGCTCGACATCTCCGGCTACCGCGCGCAGAAGCGAGCCGAGC
TGGTCCACCTGGCCGAGGAGACCGTGGCCCGGGTGCGCGAGAGCGGGGAGAGCGTCGCGCTGGACCCGATGTCGCCCTTC
GAGCGCAAGGTGGTGCACGACGCCGTGGCGGCGGCCGGGCTGACCTCGGAGTCCGAGGGCGTCGAGCCGCGCCGGCGCGT
GGTGGTGCTTCCGTCCTGA

Upstream 100 bases:

>100_bases
AGCAGCAGGCACAGCCCAAGCCGCAGTCCAAGCCGCAGTCCAAGGGACAGCAGAAGTCCCGACAGCCCAAGCCCAAGCCC
AGCCCCGAGGGGGAGCAGCA

Downstream 100 bases:

>100_bases
TCGGCGCCCGATGACCGACGATGTTTCACGTGAAACACCCTCCGTGCCGGACGTGGCCCGGAGGGTGTTCGCGTCTGACC
GGTTGTCGCTCGCGGAGCGG

Product: single-stranded nucleic acid binding R3H domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MSEDAVSDETTQAGDIAVDAAGGPEPADADDSGTGESGGSRVEQLEQEGDIAADYLEELLDIADLDGDLDMDVEGDRAAV
SIVGADLAQLVGARGEVLDALQELTRLAVYRETGERSRLMLDISGYRAQKRAELVHLAEETVARVRESGESVALDPMSPF
ERKVVHDAVAAAGLTSESEGVEPRRRVVVLPS

Sequences:

>Translated_192_residues
MSEDAVSDETTQAGDIAVDAAGGPEPADADDSGTGESGGSRVEQLEQEGDIAADYLEELLDIADLDGDLDMDVEGDRAAV
SIVGADLAQLVGARGEVLDALQELTRLAVYRETGERSRLMLDISGYRAQKRAELVHLAEETVARVRESGESVALDPMSPF
ERKVVHDAVAAAGLTSESEGVEPRRRVVVLPS
>Mature_191_residues
SEDAVSDETTQAGDIAVDAAGGPEPADADDSGTGESGGSRVEQLEQEGDIAADYLEELLDIADLDGDLDMDVEGDRAAVS
IVGADLAQLVGARGEVLDALQELTRLAVYRETGERSRLMLDISGYRAQKRAELVHLAEETVARVRESGESVALDPMSPFE
RKVVHDAVAAAGLTSESEGVEPRRRVVVLPS

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 20291; Mature: 20160

Theoretical pI: Translated: 3.90; Mature: 3.90

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEDAVSDETTQAGDIAVDAAGGPEPADADDSGTGESGGSRVEQLEQEGDIAADYLEELL
CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH
DIADLDGDLDMDVEGDRAAVSIVGADLAQLVGARGEVLDALQELTRLAVYRETGERSRLM
HHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEE
LDISGYRAQKRAELVHLAEETVARVRESGESVALDPMSPFERKVVHDAVAAAGLTSESEG
EEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCC
VEPRRRVVVLPS
CCCCCEEEEECC
>Mature Secondary Structure 
SEDAVSDETTQAGDIAVDAAGGPEPADADDSGTGESGGSRVEQLEQEGDIAADYLEELL
CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH
DIADLDGDLDMDVEGDRAAVSIVGADLAQLVGARGEVLDALQELTRLAVYRETGERSRLM
HHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEE
LDISGYRAQKRAELVHLAEETVARVRESGESVALDPMSPFERKVVHDAVAAAGLTSESEG
EEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCC
VEPRRRVVVLPS
CCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]