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The map label for this gene is ssb1 [H]

Identifier: 119718880

GI number: 119718880

Start: 4942006

End: 4942572

Strand: Reverse

Name: ssb1 [H]

Synonym: Noca_4663

Alternate gene names: 119718880

Gene position: 4942572-4942006 (Counterclockwise)

Preceding gene: 119718881

Following gene: 119718879

Centisome position: 99.13

GC content: 73.9

Gene sequence:

>567_bases
ATGGCAGGCGAGACCGTCATCACGGTGGTCGGCAACCTCGTCGACGACCCGGAGCTGCGCTTCACCCCCTCGGGGGCGGC
CGTGGCCAACTTCCGGATCGCGTCGACGCCGCGCACCTTCGACCGCCAGACCAACGAGTGGAAGGACGGCGACGCGCTGT
TCCTCTCCTGCTCGGTCTGGCGCCAGGCCGCGGAGAACGTCGCCGAGTCCCTGCAGCGCGGCATGCGTGTCGTCGTGCAG
GGCCGCCTGAAGTCCCGCACCTACGAGACCCGCGAGGGCGAGAAGCGCACCGTCTTCGAGATCGAGGTCGAGGAGGTCGG
CCCGTCGCTGAAGTACGCCACCGCCAAGGTCACCCGCACCACCCGTCAGGGCGGTGGGGGCGGCTACTCCGGCGGTGGCG
GTGGCGGCGGTCAGGCCCCGAGCGGGGACGACCCGTGGGCCACGCCTGCGCCTCAGCAGGGCGGGCAGTCCCAGGGCGGC
GGGTACGCCGGCGGGGGCGGCCAGTCCGCCCCGGCCAACGACCCGTGGGGCGCTCCCGGGGTCGGCTCGGACGAGCCGCC
GTTCTGA

Upstream 100 bases:

>100_bases
CGACCACTTCCCCCTGTCGGCGGCTGCCGCCACGATGGGCCCACGTGGTCGGCCGACCGCGGACCGACTCTGATCAGAAC
CGAACGCTAGGGAGAACCGC

Downstream 100 bases:

>100_bases
TCACCAACCCAACCGAACACCCTCAACCATTCCGGCGCAGTACCCACTCTGGGCCGGGCTTCTAGAAAGGAAGCACCACA
ATGGCCAAGGCAGTGATTCG

Product: single-strand binding protein

Products: NA

Alternate protein names: SSB 1; Helix-destabilizing protein 1 [H]

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MAGETVITVVGNLVDDPELRFTPSGAAVANFRIASTPRTFDRQTNEWKDGDALFLSCSVWRQAAENVAESLQRGMRVVVQ
GRLKSRTYETREGEKRTVFEIEVEEVGPSLKYATAKVTRTTRQGGGGGYSGGGGGGGQAPSGDDPWATPAPQQGGQSQGG
GYAGGGGQSAPANDPWGAPGVGSDEPPF

Sequences:

>Translated_188_residues
MAGETVITVVGNLVDDPELRFTPSGAAVANFRIASTPRTFDRQTNEWKDGDALFLSCSVWRQAAENVAESLQRGMRVVVQ
GRLKSRTYETREGEKRTVFEIEVEEVGPSLKYATAKVTRTTRQGGGGGYSGGGGGGGQAPSGDDPWATPAPQQGGQSQGG
GYAGGGGQSAPANDPWGAPGVGSDEPPF
>Mature_187_residues
AGETVITVVGNLVDDPELRFTPSGAAVANFRIASTPRTFDRQTNEWKDGDALFLSCSVWRQAAENVAESLQRGMRVVVQG
RLKSRTYETREGEKRTVFEIEVEEVGPSLKYATAKVTRTTRQGGGGGYSGGGGGGGQAPSGDDPWATPAPQQGGQSQGGG
YAGGGGQSAPANDPWGAPGVGSDEPPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Escherichia coli, GI1790494, Length=124, Percent_Identity=32.258064516129, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 19534; Mature: 19402

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGETVITVVGNLVDDPELRFTPSGAAVANFRIASTPRTFDRQTNEWKDGDALFLSCSVW
CCCCEEEEEECCCCCCCCEEECCCCCEEEEEEECCCCCHHCCCCCCCCCCCEEEEEHHHH
RQAAENVAESLQRGMRVVVQGRLKSRTYETREGEKRTVFEIEVEEVGPSLKYATAKVTRT
HHHHHHHHHHHHHHHHEEHHHHHHHCCCCCCCCCCCEEEEEEHHHCCCCCEEHHHHHHHH
TRQGGGGGYSGGGGGGGQAPSGDDPWATPAPQQGGQSQGGGYAGGGGQSAPANDPWGAPG
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
VGSDEPPF
CCCCCCCC
>Mature Secondary Structure 
AGETVITVVGNLVDDPELRFTPSGAAVANFRIASTPRTFDRQTNEWKDGDALFLSCSVW
CCCEEEEEECCCCCCCCEEECCCCCEEEEEEECCCCCHHCCCCCCCCCCCEEEEEHHHH
RQAAENVAESLQRGMRVVVQGRLKSRTYETREGEKRTVFEIEVEEVGPSLKYATAKVTRT
HHHHHHHHHHHHHHHHEEHHHHHHHCCCCCCCCCCCEEEEEEHHHCCCCCEEHHHHHHHH
TRQGGGGGYSGGGGGGGQAPSGDDPWATPAPQQGGQSQGGGYAGGGGQSAPANDPWGAPG
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
VGSDEPPF
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572948; 12692562 [H]