Click here to switch to the map view.

The map label for this gene is dnaB [H]

Identifier: 119718874

GI number: 119718874

Start: 4934880

End: 4937354

Strand: Reverse

Name: dnaB [H]

Synonym: Noca_4657

Alternate gene names: 119718874

Gene position: 4937354-4934880 (Counterclockwise)

Preceding gene: 119718878

Following gene: 119718873

Centisome position: 99.03

GC content: 68.04

Gene sequence:

>2475_bases
TTGAGCGTCACCGAGCAGGGCCCGCGAGGGCTGCCGGAGCCGCCGATCGACGACTGGGGCGATGGTCCGGCGGCGTACGC
CCCGGGCGAACGGCCCACGTCGCCGGGCGACCGGACGCCCCCGCAGGACATGGCCGCCGAGCAGTCGGTGCTCGGCTCGA
TGCTGATCTCCAAGGACGCCATCGCCGACGTCGCGGAGGTGCTGCGCGGGGTCGACTTCTACCGGCCCTCGCACGAGACC
ATCCACGACGCGATCATCGACCTCTACGGGCGCGGCGAGCCGGTCGACATGGTCACCGTCGCGGCCGAGCTGCAGCGCCG
CGGCGAGCTCCAGCGGATCGGCGGCGCGCCGTACCTCCACACGCTGTCCGCGAACGTGCCGATCGCCGCCAACGCCGGCT
ACTACGCCGAGATCGTCCGCGAGAAGGCGATCCTGCGCCGCCTGGTCGACGCCGGCACCAAGATCGTCCAGATCGGCTAC
GCCGGCGAGGGCCAGGTCGACGACATCGTCGACACCGCGCAGGCGGAGGTCTACAAGATCACCGACCGCCGCGCCGCGGA
GGACTACGCGCCGCTGAGCGACATCATGGACGGCGTCCTCGACGAGATCGAGGCGATCGGCAACCGCGAGGCCGGCCTGT
ACGGCGTCCCGACCGGCTTCGCCGACCTCGACGACCTGACCAACGGCCTGCACTCCGGACAGATGATCATCGTCGCGGCG
CGCCCCGCCATGGGCAAGGCGCTCGCCCTGGACACCGCGCTGCCCACCCCCTCCGGCTGGACGACGATGGGCGACGTCCA
GGTCGGCGACCAGCTGTACGACGCCCACGGCAGGCCGACCACCGTCGTGGCGGCCACGGAGGTGCTGACCGGTCGCCCTT
GCTACGAGGTCGAGTTCTCCGACGGCTCGCGGATCGTCGCCGACGCCCAGCACCAGTGGCTCACCGAGAGCCGTGCTGCA
CGGAAGTCGAGGTGGGCGGCGGACAAGCAGTACAACCGCGCCCGAAACCAGAACATCGTCGCGTCCGTGGTCACCACCGA
GGCGATCGCGGGCACGCTTCGAGTCGGTGCGGATCAACGTGCGAACCATGCCGTGCTGACGGCGGATCCGTTGTCGGGCA
GCGACGTCGACCTACCGATTCCGCCGTACGTGCTCGGCGCGTGGCTCGGCGACGGTCACAGTGCCTCCGCACGGATCACA
TGCGAGACGCCGGAGATCCCGATGTACCTCGAGGCGTGTGGACTGAGGGTCGACCACCAAGGAGCGATGCTCTACAGCCT
CAAGTTCCCCGACGGAGATCCGCGCGGCAGCGTTCAGGGTGTGCTGCGGACCATCGGCGTGCTGAACGACAAGCACATCC
CCGCTGACTACCTGCGCGCGTCCGAGGGGCAGCGCCGCGACCTCCTGGCCGGGCTGATGGACACCGATGGCACCGTCGTG
AGGGGCGTCGGCTCGTGCCAGTTCGCCGTGACCAACAAGCGCCTCGCCGACGACGTCTACGAGCTGGTCGTCAGTCTCGG
CTACAAGTGTGGACGCACGACACGGCGGGTGCAGGGCCGATCCCCGGAGACCTCGACCTGCCACATCCTCAACTTCTCGA
CCGTCGACGACGTCTTCCGGCTGGAGCGCAAGCACCTCCTCCACAAGGAAGAGCGGCCGGTGACCAGGGCGCGGATCGCA
CGCCGCTACATCACCGCCGTGCGTCCGATCGAGAGCGTCCCGGTCCGGTGCGTCGAGGTGGACAACACCGAGCACCTCTA
CCTCGCCGGCGAGTCGATGATTCCGACGCACAACTCGACGCTCGCGCTCGACCTGTGCCGTGCGGCGTCGATCCACAACA
ACCTCACGAGCGTGTTCTTCAGCCTGGAGATGACCCGCTCGGAGATCACCATGCGGCTGCTCTCGGCCGAGGCGAAGGTG
CCGCTCAACCACATCCGCAACGGCAACATGAATGACGACGACTGGGCCAAGCTGGCCCGCAAGATGGGCGAGGTGTCCTC
GGCGCCGATGTTCATCGACGACTCGCCGAACATGACGATGATGGAGATCCGCGCGAAGGCGCGACGGCTCAAGCAGCGCC
ACGACCTGCGGTTGGTCGTCATCGACTACATGCAGCTGATGACGTCGGGGCGCAAGGTGGAGTCCCGCCAGCTGGAGGTC
TCGGAGTTCTCCCGGCAGATCAAGCTGCTGGCCAAGGAGCTCGAGGTCCCGATCATCGCGCTCTCCCAGCTCAACCGTGG
CCCGGAGCAGCGCGGCGATAAGAGACCTATGATGAGTGACTTACGCGAGTCTGGGTCTTTGGAACAAGATGCGGACATGG
TCATCCTCTTGCACCGCGACGACGTCTACGAGAAGGAGTCGACCCGCCCCGGCGAGGCCGACCTGATCGTGGCCAAGCAC
CGCAACGGCCCGACCCGCGACATCACCGTGGCCTTCCAGGGCCACTACTCCCGCTTCGTCGACATGGCCCACTGA

Upstream 100 bases:

>100_bases
CCGCACCGAACACCGCCAGGTCGCAACGGCGTTGTCGGTGGCTGCTCGTAGCGTCGGCGTCGTCAGCAGGGGTCGGACGG
GTGCGATCAGGAGGGGCACG

Downstream 100 bases:

>100_bases
CCGGATGCGAATCTCGGATACAGATGAGACAAGGCCCGTTTCGTTTCAGGTCACTCGTCATTGAGGCCCCGACGTGCCGC
AAACGCGGCGGCCCGACCGG

Product: DnaB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 824; Mature: 823

Protein sequence:

>824_residues
MSVTEQGPRGLPEPPIDDWGDGPAAYAPGERPTSPGDRTPPQDMAAEQSVLGSMLISKDAIADVAEVLRGVDFYRPSHET
IHDAIIDLYGRGEPVDMVTVAAELQRRGELQRIGGAPYLHTLSANVPIAANAGYYAEIVREKAILRRLVDAGTKIVQIGY
AGEGQVDDIVDTAQAEVYKITDRRAAEDYAPLSDIMDGVLDEIEAIGNREAGLYGVPTGFADLDDLTNGLHSGQMIIVAA
RPAMGKALALDTALPTPSGWTTMGDVQVGDQLYDAHGRPTTVVAATEVLTGRPCYEVEFSDGSRIVADAQHQWLTESRAA
RKSRWAADKQYNRARNQNIVASVVTTEAIAGTLRVGADQRANHAVLTADPLSGSDVDLPIPPYVLGAWLGDGHSASARIT
CETPEIPMYLEACGLRVDHQGAMLYSLKFPDGDPRGSVQGVLRTIGVLNDKHIPADYLRASEGQRRDLLAGLMDTDGTVV
RGVGSCQFAVTNKRLADDVYELVVSLGYKCGRTTRRVQGRSPETSTCHILNFSTVDDVFRLERKHLLHKEERPVTRARIA
RRYITAVRPIESVPVRCVEVDNTEHLYLAGESMIPTHNSTLALDLCRAASIHNNLTSVFFSLEMTRSEITMRLLSAEAKV
PLNHIRNGNMNDDDWAKLARKMGEVSSAPMFIDDSPNMTMMEIRAKARRLKQRHDLRLVVIDYMQLMTSGRKVESRQLEV
SEFSRQIKLLAKELEVPIIALSQLNRGPEQRGDKRPMMSDLRESGSLEQDADMVILLHRDDVYEKESTRPGEADLIVAKH
RNGPTRDITVAFQGHYSRFVDMAH

Sequences:

>Translated_824_residues
MSVTEQGPRGLPEPPIDDWGDGPAAYAPGERPTSPGDRTPPQDMAAEQSVLGSMLISKDAIADVAEVLRGVDFYRPSHET
IHDAIIDLYGRGEPVDMVTVAAELQRRGELQRIGGAPYLHTLSANVPIAANAGYYAEIVREKAILRRLVDAGTKIVQIGY
AGEGQVDDIVDTAQAEVYKITDRRAAEDYAPLSDIMDGVLDEIEAIGNREAGLYGVPTGFADLDDLTNGLHSGQMIIVAA
RPAMGKALALDTALPTPSGWTTMGDVQVGDQLYDAHGRPTTVVAATEVLTGRPCYEVEFSDGSRIVADAQHQWLTESRAA
RKSRWAADKQYNRARNQNIVASVVTTEAIAGTLRVGADQRANHAVLTADPLSGSDVDLPIPPYVLGAWLGDGHSASARIT
CETPEIPMYLEACGLRVDHQGAMLYSLKFPDGDPRGSVQGVLRTIGVLNDKHIPADYLRASEGQRRDLLAGLMDTDGTVV
RGVGSCQFAVTNKRLADDVYELVVSLGYKCGRTTRRVQGRSPETSTCHILNFSTVDDVFRLERKHLLHKEERPVTRARIA
RRYITAVRPIESVPVRCVEVDNTEHLYLAGESMIPTHNSTLALDLCRAASIHNNLTSVFFSLEMTRSEITMRLLSAEAKV
PLNHIRNGNMNDDDWAKLARKMGEVSSAPMFIDDSPNMTMMEIRAKARRLKQRHDLRLVVIDYMQLMTSGRKVESRQLEV
SEFSRQIKLLAKELEVPIIALSQLNRGPEQRGDKRPMMSDLRESGSLEQDADMVILLHRDDVYEKESTRPGEADLIVAKH
RNGPTRDITVAFQGHYSRFVDMAH
>Mature_823_residues
SVTEQGPRGLPEPPIDDWGDGPAAYAPGERPTSPGDRTPPQDMAAEQSVLGSMLISKDAIADVAEVLRGVDFYRPSHETI
HDAIIDLYGRGEPVDMVTVAAELQRRGELQRIGGAPYLHTLSANVPIAANAGYYAEIVREKAILRRLVDAGTKIVQIGYA
GEGQVDDIVDTAQAEVYKITDRRAAEDYAPLSDIMDGVLDEIEAIGNREAGLYGVPTGFADLDDLTNGLHSGQMIIVAAR
PAMGKALALDTALPTPSGWTTMGDVQVGDQLYDAHGRPTTVVAATEVLTGRPCYEVEFSDGSRIVADAQHQWLTESRAAR
KSRWAADKQYNRARNQNIVASVVTTEAIAGTLRVGADQRANHAVLTADPLSGSDVDLPIPPYVLGAWLGDGHSASARITC
ETPEIPMYLEACGLRVDHQGAMLYSLKFPDGDPRGSVQGVLRTIGVLNDKHIPADYLRASEGQRRDLLAGLMDTDGTVVR
GVGSCQFAVTNKRLADDVYELVVSLGYKCGRTTRRVQGRSPETSTCHILNFSTVDDVFRLERKHLLHKEERPVTRARIAR
RYITAVRPIESVPVRCVEVDNTEHLYLAGESMIPTHNSTLALDLCRAASIHNNLTSVFFSLEMTRSEITMRLLSAEAKVP
LNHIRNGNMNDDDWAKLARKMGEVSSAPMFIDDSPNMTMMEIRAKARRLKQRHDLRLVVIDYMQLMTSGRKVESRQLEVS
EFSRQIKLLAKELEVPIIALSQLNRGPEQRGDKRPMMSDLRESGSLEQDADMVILLHRDDVYEKESTRPGEADLIVAKHR
NGPTRDITVAFQGHYSRFVDMAH

Specific function: Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity [H]

COG id: COG0305

COG function: function code L; Replicative DNA helicase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SF4 helicase domain [H]

Homologues:

Organism=Escherichia coli, GI1790486, Length=227, Percent_Identity=44.4933920704846, Blast_Score=203, Evalue=4e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007694
- InterPro:   IPR006142
- InterPro:   IPR004042
- InterPro:   IPR006141 [H]

Pfam domain/function: PF03796 DnaB_C [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 90665; Mature: 90534

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: PS50819 INTEIN_ENDONUCLEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVTEQGPRGLPEPPIDDWGDGPAAYAPGERPTSPGDRTPPQDMAAEQSVLGSMLISKDA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
IADVAEVLRGVDFYRPSHETIHDAIIDLYGRGEPVDMVTVAAELQRRGELQRIGGAPYLH
HHHHHHHHHCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHCCCCCEEE
TLSANVPIAANAGYYAEIVREKAILRRLVDAGTKIVQIGYAGEGQVDDIVDTAQAEVYKI
EECCCCCEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHEEEE
TDRRAAEDYAPLSDIMDGVLDEIEAIGNREAGLYGVPTGFADLDDLTNGLHSGQMIIVAA
CCHHCHHHCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHCCCCEEEEEE
RPAMGKALALDTALPTPSGWTTMGDVQVGDQLYDAHGRPTTVVAATEVLTGRPCYEVEFS
CCCCCCEEEEECCCCCCCCCCEECCEECCHHHHHCCCCCEEEEEEHHHHCCCCEEEEEEC
DGSRIVADAQHQWLTESRAARKSRWAADKQYNRARNQNIVASVVTTEAIAGTLRVGADQR
CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHEECCCCC
ANHAVLTADPLSGSDVDLPIPPYVLGAWLGDGHSASARITCETPEIPMYLEACGLRVDHQ
CCCEEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCCCHHHHHCCCEEECC
GAMLYSLKFPDGDPRGSVQGVLRTIGVLNDKHIPADYLRASEGQRRDLLAGLMDTDGTVV
CEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCEE
RGVGSCQFAVTNKRLADDVYELVVSLGYKCGRTTRRVQGRSPETSTCHILNFSTVDDVFR
ECCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCEEEEEECCHHHHHHH
LERKHLLHKEERPVTRARIARRYITAVRPIESVPVRCVEVDNTEHLYLAGESMIPTHNST
HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCE
LALDLCRAASIHNNLTSVFFSLEMTRSEITMRLLSAEAKVPLNHIRNGNMNDDDWAKLAR
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHH
KMGEVSSAPMFIDDSPNMTMMEIRAKARRLKQRHDLRLVVIDYMQLMTSGRKVESRQLEV
HHCCCCCCCEEEECCCCEEHHHHHHHHHHHHHHCCCEEEHHHHHHHHHCCCCCHHHCCCH
SEFSRQIKLLAKELEVPIIALSQLNRGPEQRGDKRPMMSDLRESGSLEQDADMVILLHRD
HHHHHHHHHHHHHHCCCEEEHHHCCCCCHHCCCCCHHHHHHHHCCCCCCCCCEEEEEECC
DVYEKESTRPGEADLIVAKHRNGPTRDITVAFQGHYSRFVDMAH
CCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCHHHHHHCCC
>Mature Secondary Structure 
SVTEQGPRGLPEPPIDDWGDGPAAYAPGERPTSPGDRTPPQDMAAEQSVLGSMLISKDA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
IADVAEVLRGVDFYRPSHETIHDAIIDLYGRGEPVDMVTVAAELQRRGELQRIGGAPYLH
HHHHHHHHHCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHCCCCCEEE
TLSANVPIAANAGYYAEIVREKAILRRLVDAGTKIVQIGYAGEGQVDDIVDTAQAEVYKI
EECCCCCEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHEEEE
TDRRAAEDYAPLSDIMDGVLDEIEAIGNREAGLYGVPTGFADLDDLTNGLHSGQMIIVAA
CCHHCHHHCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHCCCCEEEEEE
RPAMGKALALDTALPTPSGWTTMGDVQVGDQLYDAHGRPTTVVAATEVLTGRPCYEVEFS
CCCCCCEEEEECCCCCCCCCCEECCEECCHHHHHCCCCCEEEEEEHHHHCCCCEEEEEEC
DGSRIVADAQHQWLTESRAARKSRWAADKQYNRARNQNIVASVVTTEAIAGTLRVGADQR
CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHEECCCCC
ANHAVLTADPLSGSDVDLPIPPYVLGAWLGDGHSASARITCETPEIPMYLEACGLRVDHQ
CCCEEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCCCHHHHHCCCEEECC
GAMLYSLKFPDGDPRGSVQGVLRTIGVLNDKHIPADYLRASEGQRRDLLAGLMDTDGTVV
CEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCEE
RGVGSCQFAVTNKRLADDVYELVVSLGYKCGRTTRRVQGRSPETSTCHILNFSTVDDVFR
ECCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCEEEEEECCHHHHHHH
LERKHLLHKEERPVTRARIARRYITAVRPIESVPVRCVEVDNTEHLYLAGESMIPTHNST
HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCE
LALDLCRAASIHNNLTSVFFSLEMTRSEITMRLLSAEAKVPLNHIRNGNMNDDDWAKLAR
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHH
KMGEVSSAPMFIDDSPNMTMMEIRAKARRLKQRHDLRLVVIDYMQLMTSGRKVESRQLEV
HHCCCCCCCEEEECCCCEEHHHHHHHHHHHHHHCCCEEEHHHHHHHHHCCCCCHHHCCCH
SEFSRQIKLLAKELEVPIIALSQLNRGPEQRGDKRPMMSDLRESGSLEQDADMVILLHRD
HHHHHHHHHHHHHHCCCEEEHHHCCCCCHHCCCCCHHHHHHHHCCCCCCCCCEEEEEECC
DVYEKESTRPGEADLIVAKHRNGPTRDITVAFQGHYSRFVDMAH
CCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA