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The map label for this gene is yfdE [H]

Identifier: 119718789

GI number: 119718789

Start: 4838469

End: 4839626

Strand: Reverse

Name: yfdE [H]

Synonym: Noca_4571

Alternate gene names: 119718789

Gene position: 4839626-4838469 (Counterclockwise)

Preceding gene: 119718790

Following gene: 119718788

Centisome position: 97.07

GC content: 74.44

Gene sequence:

>1158_bases
ATGAGCATCGAGCTGGGCCAGGGCACCGGACCCCTCCGGGGTGTGAAGGTCGTCGAGATCGCGGGCATCGGGCCGGGGCC
GCACGCCTGCATGACGCTGGCCGACCTCGGCGCGGACGTGATCCGCGTCGAGCGGCCCGGAGGGCAGCTGCTCGCCGGTG
GCGGCCCGCACATGTTCCTCAACCGCGGCCGCCCGAGCGTGGCGCTCGACCTCAAGCACCCCGACGCGATCCGGACGGTC
CTGGAGCTCGTGGCCGGCGCCGACGTCCTCGTCGAGGGGATGCGCCCCGGCGTGGCCGAGCGCCTCGGCTTCGGACCCGA
GGTGTGCCACGAGCGCAACCCGCGGCTGGTCTACGGCCGGATGACCGGGTGGGGGCAGGACGGTCCGTTCGCCCAGGTCG
CCGGCCACGACCTGAACTACATCTCGATCACCGGCGCGCTGCACGGCCTGGGCCAGGACAAGGCCCGCCCGCACTTCCCG
GGAAACCTGCTGGGCGACTTCGGCGGCGGCTCGACGTACCTCGTCATCGGCGTCCTCGCCGCGCTCCTCGAGGCCCGCGC
CTCCGGCCAGGGCCAGGTGGTCGACGCCGCGATCGTCGACGGCACCGCCCACCTGAACACGATGGCGGCCGCGTTCCTCG
CGGCCGGCACGTTCAAGGAGGAGCGGGCCGCCAACCTGCTCGACGGCGGCGTCCCCTACTACGACATCTACGAGACCGCG
GACGGCAAGCACATGTCCGTGGGCGCCCTCGAGCCGCAGTTCTACGACGAGTTCGTCCGGCTGCTCGGGATCGCGGACCG
CGCCCCCGACCGCTACGACGCGGACCGGGCCGAGGCGCTGCGGACGCTGATCGCCGACACGTTCCGCACCCGCACCCAGG
CCGAGTGGGTCGAGCTGTTCGAGGGCACCGACGCCTGCGTCGCCGGGATCATCCCGCTCACCGAGGCCGCCGAGCACCCG
CACATGAGGGCGCGCGGCGTCCTCGTCGAGCGCGACGGCTACCTCCAGCCCGCGCCCGCGCCGCGCTTCTCGCGCACCGC
GGCCACCCTCGGCCGCACCGCCGAGGACGCCGGGCAGAGCACCCGCGAGGCGCTCGCCGCCTGGGGCGTGACCGGCGTGG
AAGCGCTGCTCGAGAGCGGGGCCGCCGTCCAGGGATGA

Upstream 100 bases:

>100_bases
CGCATGGTGGTCGCCAGGATGGCTGAGCACCACCGGCGCCGGGCGTGGCTGTGGACGAGAGCGCGACGACCCTGACAGCA
CTTCTGTCACAATCGCCCAC

Downstream 100 bases:

>100_bases
TGGGGCGCATGAAGCCGTTCCTCTTCCTGGGCACGCGCGCGGAGGACGAGGCCGCGGACAGCGAGTACGCCGCCGTCCTG
CGCTGCGCCGGGCTCGAGGA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 384

Protein sequence:

>385_residues
MSIELGQGTGPLRGVKVVEIAGIGPGPHACMTLADLGADVIRVERPGGQLLAGGGPHMFLNRGRPSVALDLKHPDAIRTV
LELVAGADVLVEGMRPGVAERLGFGPEVCHERNPRLVYGRMTGWGQDGPFAQVAGHDLNYISITGALHGLGQDKARPHFP
GNLLGDFGGGSTYLVIGVLAALLEARASGQGQVVDAAIVDGTAHLNTMAAAFLAAGTFKEERAANLLDGGVPYYDIYETA
DGKHMSVGALEPQFYDEFVRLLGIADRAPDRYDADRAEALRTLIADTFRTRTQAEWVELFEGTDACVAGIIPLTEAAEHP
HMRARGVLVERDGYLQPAPAPRFSRTAATLGRTAEDAGQSTREALAAWGVTGVEALLESGAAVQG

Sequences:

>Translated_385_residues
MSIELGQGTGPLRGVKVVEIAGIGPGPHACMTLADLGADVIRVERPGGQLLAGGGPHMFLNRGRPSVALDLKHPDAIRTV
LELVAGADVLVEGMRPGVAERLGFGPEVCHERNPRLVYGRMTGWGQDGPFAQVAGHDLNYISITGALHGLGQDKARPHFP
GNLLGDFGGGSTYLVIGVLAALLEARASGQGQVVDAAIVDGTAHLNTMAAAFLAAGTFKEERAANLLDGGVPYYDIYETA
DGKHMSVGALEPQFYDEFVRLLGIADRAPDRYDADRAEALRTLIADTFRTRTQAEWVELFEGTDACVAGIIPLTEAAEHP
HMRARGVLVERDGYLQPAPAPRFSRTAATLGRTAEDAGQSTREALAAWGVTGVEALLESGAAVQG
>Mature_384_residues
SIELGQGTGPLRGVKVVEIAGIGPGPHACMTLADLGADVIRVERPGGQLLAGGGPHMFLNRGRPSVALDLKHPDAIRTVL
ELVAGADVLVEGMRPGVAERLGFGPEVCHERNPRLVYGRMTGWGQDGPFAQVAGHDLNYISITGALHGLGQDKARPHFPG
NLLGDFGGGSTYLVIGVLAALLEARASGQGQVVDAAIVDGTAHLNTMAAAFLAAGTFKEERAANLLDGGVPYYDIYETAD
GKHMSVGALEPQFYDEFVRLLGIADRAPDRYDADRAEALRTLIADTFRTRTQAEWVELFEGTDACVAGIIPLTEAAEHPH
MRARGVLVERDGYLQPAPAPRFSRTAATLGRTAEDAGQSTREALAAWGVTGVEALLESGAAVQG

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI266456254, Length=368, Percent_Identity=39.6739130434783, Blast_Score=287, Evalue=1e-77,
Organism=Homo sapiens, GI42794625, Length=368, Percent_Identity=39.6739130434783, Blast_Score=287, Evalue=1e-77,
Organism=Homo sapiens, GI266458393, Length=274, Percent_Identity=41.6058394160584, Blast_Score=233, Evalue=2e-61,
Organism=Homo sapiens, GI266458397, Length=249, Percent_Identity=43.3734939759036, Blast_Score=229, Evalue=4e-60,
Organism=Homo sapiens, GI300863128, Length=378, Percent_Identity=29.3650793650794, Blast_Score=155, Evalue=6e-38,
Organism=Homo sapiens, GI300863124, Length=311, Percent_Identity=30.8681672025724, Blast_Score=145, Evalue=8e-35,
Organism=Homo sapiens, GI42822893, Length=139, Percent_Identity=43.8848920863309, Blast_Score=129, Evalue=4e-30,
Organism=Homo sapiens, GI266458395, Length=139, Percent_Identity=43.8848920863309, Blast_Score=129, Evalue=5e-30,
Organism=Homo sapiens, GI300863126, Length=377, Percent_Identity=26.525198938992, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI13376042, Length=311, Percent_Identity=26.0450160771704, Blast_Score=106, Evalue=3e-23,
Organism=Escherichia coli, GI87082093, Length=361, Percent_Identity=28.808864265928, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1788717, Length=207, Percent_Identity=32.8502415458937, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1786222, Length=399, Percent_Identity=24.3107769423559, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI32564160, Length=337, Percent_Identity=31.7507418397626, Blast_Score=196, Evalue=2e-50,
Organism=Caenorhabditis elegans, GI115535051, Length=338, Percent_Identity=32.8402366863905, Blast_Score=189, Evalue=3e-48,
Organism=Drosophila melanogaster, GI24585488, Length=347, Percent_Identity=39.4812680115274, Blast_Score=256, Evalue=2e-68,
Organism=Drosophila melanogaster, GI24648431, Length=379, Percent_Identity=29.8153034300792, Blast_Score=124, Evalue=9e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 40527; Mature: 40396

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIELGQGTGPLRGVKVVEIAGIGPGPHACMTLADLGADVIRVERPGGQLLAGGGPHMFL
CEEECCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCEEECCCCEEEE
NRGRPSVALDLKHPDAIRTVLELVAGADVLVEGMRPGVAERLGFGPEVCHERNPRLVYGR
ECCCCCEEEECCCCHHHHHHHHHHHCHHHHHHCCCCCHHHHHCCCHHHHHCCCCCEEEEE
MTGWGQDGPFAQVAGHDLNYISITGALHGLGQDKARPHFPGNLLGDFGGGSTYLVIGVLA
CCCCCCCCCCHHHCCCCCCEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
ALLEARASGQGQVVDAAIVDGTAHLNTMAAAFLAAGTFKEERAANLLDGGVPYYDIYETA
HHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEECC
DGKHMSVGALEPQFYDEFVRLLGIADRAPDRYDADRAEALRTLIADTFRTRTQAEWVELF
CCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EGTDACVAGIIPLTEAAEHPHMRARGVLVERDGYLQPAPAPRFSRTAATLGRTAEDAGQS
CCCHHHHHHHHHHHHHCCCCCHHHCCEEEECCCCCCCCCCCCHHHHHHHHCCCHHHHHHH
TREALAAWGVTGVEALLESGAAVQG
HHHHHHHHCHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SIELGQGTGPLRGVKVVEIAGIGPGPHACMTLADLGADVIRVERPGGQLLAGGGPHMFL
EEECCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCEEECCCCEEEE
NRGRPSVALDLKHPDAIRTVLELVAGADVLVEGMRPGVAERLGFGPEVCHERNPRLVYGR
ECCCCCEEEECCCCHHHHHHHHHHHCHHHHHHCCCCCHHHHHCCCHHHHHCCCCCEEEEE
MTGWGQDGPFAQVAGHDLNYISITGALHGLGQDKARPHFPGNLLGDFGGGSTYLVIGVLA
CCCCCCCCCCHHHCCCCCCEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
ALLEARASGQGQVVDAAIVDGTAHLNTMAAAFLAAGTFKEERAANLLDGGVPYYDIYETA
HHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEECC
DGKHMSVGALEPQFYDEFVRLLGIADRAPDRYDADRAEALRTLIADTFRTRTQAEWVELF
CCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EGTDACVAGIIPLTEAAEHPHMRARGVLVERDGYLQPAPAPRFSRTAATLGRTAEDAGQS
CCCHHHHHHHHHHHHHCCCCCHHHCCEEEECCCCCCCCCCCCHHHHHHHHCCCHHHHHHH
TREALAAWGVTGVEALLESGAAVQG
HHHHHHHHCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]