| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is phzB [H]
Identifier: 119718748
GI number: 119718748
Start: 4790398
End: 4792398
Strand: Reverse
Name: phzB [H]
Synonym: Noca_4529
Alternate gene names: 119718748
Gene position: 4792398-4790398 (Counterclockwise)
Preceding gene: 119718749
Following gene: 119718747
Centisome position: 96.12
GC content: 71.51
Gene sequence:
>2001_bases ATGACCGATCGGCCTGCGCCTGATGTCCGGGAAGCCATCGCGGCCCTCCAGGGACACGAGGCGTGGGCGATCATCCGGCG CTCGACGCGGGCCGGCGACCGCGACACCGTGGGCCTGGTCGGCGGCCGGCGCCGCGTGGTCGAGTCGATCCTCGACGTAC CCCTCGAGGAGGGCGTGCCGCAGGAGGGGCACATCGCCGACCGGCTGCTGGCGGTGCCGTTCCGCCAGGTCCGCGAGCGC GGCTTCGAGGCGCACGACGACGGAACCCCGCTGGTGGTGGTCGAGGTCGAGACCGAGCTGGAGTTCTCGGTCGCCGAGGT CGTCGACGCCATCGACGACACCGGCGTGGAGTTCGCCGACCGCGGGGGCTTCGAGACCGACGACGAGGAGTACGCCGAGC TGGTCGCGGCGATCATCCACGACGAGATCGGGCAGGGCGAGGGCGCCAACCTGGTCGTCGGCCGGCACTACCGCGCGACC GTCGCGGACTGGGGCGCCGACACGGCGCTCACCGTCTTCCGGCGGCTGCTGGAGCGCGAGCGCGGCGCCTACTGGACCTA CGTCTTCTTCACCGGTGACCGCTACCTGATCGGCGCCAGCCCCGAGCGGCACGTCTCCATCCACCCGGTCCGCGACGGAG CCGAGCAGGGGACGAGCGAGCGACCGAGCGGACCGTTCGGGTTGGCCGACGTGCGGATGAATCCGATCAGCGGCACGTTC CGGATCCCGCGGGAGGGCGACGGCCCCGTGCAGGGAAGGCTGCTGGAGTTCCTGCGCGACGAGAAGGAGATCTACGAGCT CTTCATGGTCGTCGACGAGGAGCTGAAGATGATGTGCGACATCTGCAACGAGGGGGGCCAGGTGCTCGGCCCCTTCCTCA AGCCGATGAGCCACCTCGTGCACACCGAGTACCTCCTCGCCGGCCGCACCAGCCGTGACCCGCGCGAGGTGCTGCGCGAC ACCATGTACGCCGCGACCGTCACCGGCTCGCCCGTGGAGAACGCCTGCCGGCTGATCAAGCGGTACGAGACCGAGGGCCG CGGCTACTACGGCGCCGCGCTGGCGATCCTGGGCCGCGACGAGGTCGGTGGACCGGTCGTGGACAGCCCGATCGTGATCC GCACGGCGGACGTCGGGCTGGACGGCCGGCTCACGGTCACCGCGGGGGCGACCCTGGTGCGCGACTCGGACCCGGCGTAC GAGGTCGCCGAGACGCACGCGAAGGCCGGTGGCATCCTCAGCGCCTTCGGGCTGGTCCCGCCCGCGCCGCGGCCCGACGT CAACCTCGCCGAGCTGGTCAGCGACGAGGACGTGCTGCTGGCGCTGAACGCGCGCAACCGGCGGCTCAGCCGGTTCTGGC TCACCGACCAGGGCGGCTCCCCGCCGGACCCGCGGCTGGCCGGGAAGAGCGTCGTCATCCTCGACGGCGAGGACGACTTC GTGAACATGCTGCGCCACGTGCTCGGCGTGCTGGGGATGACCAGCGAGGTGGTGCGCCACGCCGACTACGCGCCGGGCTG CCTGGACGGGTACGACCTGGTGATCGTCGGCCCGGGCCCGGGCGACCCGCGCGACGGCGCCGACCCGAAGATGGCGAGCC TGCGGGCCGCGGTCGCCGAGCTGATGACCGCCGGCCGGCCGTTCCTCGCGGTGTGCCTGGGCCACCAGGCGCTGTGCCAC CACCTCGGCCTCCCGCTGACCTACAAGGACATCGTCTTTCAGGGCACCCAGTCACCGGTGCCGATCCGCGGGCGGACCGA GCGGGTGGGCTTCTACAACACCTTCGTCGGCCGGCTCGACCCCGGTTCGGGAGCCCCGGAGGGGGTCGAGGTGGAGGCGG ATGTCCAGACCGGTGACATCCATCTCCTGCGCGGTCCGCACTACCGCGGCATCCAGTTCCACGCTGAATCCATCCTCACC GAGCACGGCTACGACCTCCTGCACGAAATCGTGTCGGAGCTTCTGCTCGATGTTGAGGCGTCGGATCCCGCCGACGAGTA G
Upstream 100 bases:
>100_bases CTGGTCAGGCTCCTCGAGGGCCGACGACTCGAGGCGGCCGCTGGCGCAGCGCGGTGAGACGGGAAACTGGCGCCGCCTCG GCGAGAACTAGAGTCGCGCC
Downstream 100 bases:
>100_bases GCTTGGCGGCGTAGCACGGCGGGAACCCGCTCATGGGCCCGGTGAAGACTGCCCCCCAGCTTCATCGGGCCCGTCCCGTC CCTGGAGTAGGTTGCGCGCG
Product: anthranilate synthase component I/chorismate-binding protein
Products: NA
Alternate protein names: Glutamine amidotransferase [H]
Number of amino acids: Translated: 666; Mature: 665
Protein sequence:
>666_residues MTDRPAPDVREAIAALQGHEAWAIIRRSTRAGDRDTVGLVGGRRRVVESILDVPLEEGVPQEGHIADRLLAVPFRQVRER GFEAHDDGTPLVVVEVETELEFSVAEVVDAIDDTGVEFADRGGFETDDEEYAELVAAIIHDEIGQGEGANLVVGRHYRAT VADWGADTALTVFRRLLERERGAYWTYVFFTGDRYLIGASPERHVSIHPVRDGAEQGTSERPSGPFGLADVRMNPISGTF RIPREGDGPVQGRLLEFLRDEKEIYELFMVVDEELKMMCDICNEGGQVLGPFLKPMSHLVHTEYLLAGRTSRDPREVLRD TMYAATVTGSPVENACRLIKRYETEGRGYYGAALAILGRDEVGGPVVDSPIVIRTADVGLDGRLTVTAGATLVRDSDPAY EVAETHAKAGGILSAFGLVPPAPRPDVNLAELVSDEDVLLALNARNRRLSRFWLTDQGGSPPDPRLAGKSVVILDGEDDF VNMLRHVLGVLGMTSEVVRHADYAPGCLDGYDLVIVGPGPGDPRDGADPKMASLRAAVAELMTAGRPFLAVCLGHQALCH HLGLPLTYKDIVFQGTQSPVPIRGRTERVGFYNTFVGRLDPGSGAPEGVEVEADVQTGDIHLLRGPHYRGIQFHAESILT EHGYDLLHEIVSELLLDVEASDPADE
Sequences:
>Translated_666_residues MTDRPAPDVREAIAALQGHEAWAIIRRSTRAGDRDTVGLVGGRRRVVESILDVPLEEGVPQEGHIADRLLAVPFRQVRER GFEAHDDGTPLVVVEVETELEFSVAEVVDAIDDTGVEFADRGGFETDDEEYAELVAAIIHDEIGQGEGANLVVGRHYRAT VADWGADTALTVFRRLLERERGAYWTYVFFTGDRYLIGASPERHVSIHPVRDGAEQGTSERPSGPFGLADVRMNPISGTF RIPREGDGPVQGRLLEFLRDEKEIYELFMVVDEELKMMCDICNEGGQVLGPFLKPMSHLVHTEYLLAGRTSRDPREVLRD TMYAATVTGSPVENACRLIKRYETEGRGYYGAALAILGRDEVGGPVVDSPIVIRTADVGLDGRLTVTAGATLVRDSDPAY EVAETHAKAGGILSAFGLVPPAPRPDVNLAELVSDEDVLLALNARNRRLSRFWLTDQGGSPPDPRLAGKSVVILDGEDDF VNMLRHVLGVLGMTSEVVRHADYAPGCLDGYDLVIVGPGPGDPRDGADPKMASLRAAVAELMTAGRPFLAVCLGHQALCH HLGLPLTYKDIVFQGTQSPVPIRGRTERVGFYNTFVGRLDPGSGAPEGVEVEADVQTGDIHLLRGPHYRGIQFHAESILT EHGYDLLHEIVSELLLDVEASDPADE >Mature_665_residues TDRPAPDVREAIAALQGHEAWAIIRRSTRAGDRDTVGLVGGRRRVVESILDVPLEEGVPQEGHIADRLLAVPFRQVRERG FEAHDDGTPLVVVEVETELEFSVAEVVDAIDDTGVEFADRGGFETDDEEYAELVAAIIHDEIGQGEGANLVVGRHYRATV ADWGADTALTVFRRLLERERGAYWTYVFFTGDRYLIGASPERHVSIHPVRDGAEQGTSERPSGPFGLADVRMNPISGTFR IPREGDGPVQGRLLEFLRDEKEIYELFMVVDEELKMMCDICNEGGQVLGPFLKPMSHLVHTEYLLAGRTSRDPREVLRDT MYAATVTGSPVENACRLIKRYETEGRGYYGAALAILGRDEVGGPVVDSPIVIRTADVGLDGRLTVTAGATLVRDSDPAYE VAETHAKAGGILSAFGLVPPAPRPDVNLAELVSDEDVLLALNARNRRLSRFWLTDQGGSPPDPRLAGKSVVILDGEDDFV NMLRHVLGVLGMTSEVVRHADYAPGCLDGYDLVIVGPGPGDPRDGADPKMASLRAAVAELMTAGRPFLAVCLGHQALCHH LGLPLTYKDIVFQGTQSPVPIRGRTERVGFYNTFVGRLDPGSGAPEGVEVEADVQTGDIHLLRGPHYRGIQFHAESILTE HGYDLLHEIVSELLLDVEASDPADE
Specific function: Involved in the biosynthesis of the antibiotic, phenazine, a nitrogen-containing heterocyclic molecule having important roles in virulence, competition and biological control [H]
COG id: COG0147
COG function: function code EH; Anthranilate/para-aminobenzoate synthases component I
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 glutamine amidotransferase type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1787518, Length=242, Percent_Identity=31.404958677686, Blast_Score=72, Evalue=8e-14,
Paralogues:
None
Copy number: 700 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005801 - InterPro: IPR006220 - InterPro: IPR001317 - InterPro: IPR015890 - InterPro: IPR011702 - InterPro: IPR017926 - InterPro: IPR000991 [H]
Pfam domain/function: PF00425 Chorismate_bind; PF00117 GATase [H]
EC number: =4.1.3.27 [H]
Molecular weight: Translated: 72544; Mature: 72412
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDRPAPDVREAIAALQGHEAWAIIRRSTRAGDRDTVGLVGGRRRVVESILDVPLEEGVP CCCCCCCHHHHHHHHHCCCCCEEEEEHHCCCCCCCCEEECCCHHHHHHHHHCCCHHHCCC QEGHIADRLLAVPFRQVRERGFEAHDDGTPLVVVEVETELEFSVAEVVDAIDDTGVEFAD CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCHHH RGGFETDDEEYAELVAAIIHDEIGQGEGANLVVGRHYRATVADWGADTALTVFRRLLERE CCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEHHHCCCCHHHHHHHHHHHHC RGAYWTYVFFTGDRYLIGASPERHVSIHPVRDGAEQGTSERPSGPFGLADVRMNPISGTF CCCEEEEEEEECCEEEECCCCCCCEEEEECCCCHHCCCCCCCCCCCCEEEEEECCCCCEE RIPREGDGPVQGRLLEFLRDEKEIYELFMVVDEELKMMCDICNEGGQVLGPFLKPMSHLV ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH HTEYLLAGRTSRDPREVLRDTMYAATVTGSPVENACRLIKRYETEGRGYYGAALAILGRD HHHHHCCCCCCCCHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECC EVGGPVVDSPIVIRTADVGLDGRLTVTAGATLVRDSDPAYEVAETHAKAGGILSAFGLVP CCCCCCCCCCEEEEEECCCCCCEEEEEECEEEEECCCCCHHHHHHHHHCCCHHHHHCCCC PAPRPDVNLAELVSDEDVLLALNARNRRLSRFWLTDQGGSPPDPRLAGKSVVILDGEDDF CCCCCCCCHHHHCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCHHH VNMLRHVLGVLGMTSEVVRHADYAPGCLDGYDLVIVGPGPGDPRDGADPKMASLRAAVAE HHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHH LMTAGRPFLAVCLGHQALCHHLGLPLTYKDIVFQGTQSPVPIRGRTERVGFYNTFVGRLD HHHCCCCHHHHHHHHHHHHHHCCCCCEEHHHEEECCCCCCCCCCCCCCCCCHHHHHCCCC PGSGAPEGVEVEADVQTGDIHLLRGPHYRGIQFHAESILTEHGYDLLHEIVSELLLDVEA CCCCCCCCEEEEEECEECCEEEEECCCCCCEEHHHHHHHHHCCHHHHHHHHHHHHHCCCC SDPADE CCCCCC >Mature Secondary Structure TDRPAPDVREAIAALQGHEAWAIIRRSTRAGDRDTVGLVGGRRRVVESILDVPLEEGVP CCCCCCHHHHHHHHHCCCCCEEEEEHHCCCCCCCCEEECCCHHHHHHHHHCCCHHHCCC QEGHIADRLLAVPFRQVRERGFEAHDDGTPLVVVEVETELEFSVAEVVDAIDDTGVEFAD CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCHHH RGGFETDDEEYAELVAAIIHDEIGQGEGANLVVGRHYRATVADWGADTALTVFRRLLERE CCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEHHHCCCCHHHHHHHHHHHHC RGAYWTYVFFTGDRYLIGASPERHVSIHPVRDGAEQGTSERPSGPFGLADVRMNPISGTF CCCEEEEEEEECCEEEECCCCCCCEEEEECCCCHHCCCCCCCCCCCCEEEEEECCCCCEE RIPREGDGPVQGRLLEFLRDEKEIYELFMVVDEELKMMCDICNEGGQVLGPFLKPMSHLV ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH HTEYLLAGRTSRDPREVLRDTMYAATVTGSPVENACRLIKRYETEGRGYYGAALAILGRD HHHHHCCCCCCCCHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECC EVGGPVVDSPIVIRTADVGLDGRLTVTAGATLVRDSDPAYEVAETHAKAGGILSAFGLVP CCCCCCCCCCEEEEEECCCCCCEEEEEECEEEEECCCCCHHHHHHHHHCCCHHHHHCCCC PAPRPDVNLAELVSDEDVLLALNARNRRLSRFWLTDQGGSPPDPRLAGKSVVILDGEDDF CCCCCCCCHHHHCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCHHH VNMLRHVLGVLGMTSEVVRHADYAPGCLDGYDLVIVGPGPGDPRDGADPKMASLRAAVAE HHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHH LMTAGRPFLAVCLGHQALCHHLGLPLTYKDIVFQGTQSPVPIRGRTERVGFYNTFVGRLD HHHCCCCHHHHHHHHHHHHHHCCCCCEEHHHEEECCCCCCCCCCCCCCCCCHHHHHCCCC PGSGAPEGVEVEADVQTGDIHLLRGPHYRGIQFHAESILTEHGYDLLHEIVSELLLDVEA CCCCCCCCEEEEEECEECCEEEEECCCCCCEEHHHHHHHHHCCHHHHHHHHHHHHHCCCC SDPADE CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8586283 [H]