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The map label for this gene is ybbD [H]

Identifier: 119718705

GI number: 119718705

Start: 4742716

End: 4744122

Strand: Reverse

Name: ybbD [H]

Synonym: Noca_4486

Alternate gene names: 119718705

Gene position: 4744122-4742716 (Counterclockwise)

Preceding gene: 119718706

Following gene: 119718704

Centisome position: 95.15

GC content: 77.54

Gene sequence:

>1407_bases
GTGAGCGACCTGACCAGGAGCCGGCCCGAGAACGGGCAGAGCCTCGAGCAGCTCGCGCTCCGGGTGCTGCTGCCCGCCTT
CCCCGGCACGACGCTGGCCCGGGACGTGGCCGGCCTGTTCGCCGAGGGGCTCGGCGGGGTCTGCCTGTTCGGCAGCAACA
CCGCCGACGGGCCCGCCGCGGTCGCCGAGCTCACCAGCGCGATCCACGCGGCCGCGCCGTACGCCGTCGTCGCGGTCGAC
GAGGAGGGCGGCGACGTCACCCGGCTGCACGCGCTCGATAGGAGCCCCGTGCTGGGGCCGGCCGCCCTCGGCGCGGCCGG
CGACCTCGCGCTGACCCGGGAGACCGGCGCGGCGATCGGCACCGAGCTGGCCGCGGCCGGCATCGACCTCGACCTCGGGC
CGGTCGCCGACGTGAACTCCGACCCGGACAACCCGGTGATCGGCACCCGCAGCTTCGGCACCGACGCCGCGGCGGCCGCC
GCGCACACCGCCGCGTGGGTGGCCGGGCTCCAGGGGGCGGGCGTCGCGGCCTGCGCCAAGCACTTCCCGGGCCACGGCGA
CACCGCCCAGGACAGCCACCTCGCGCTGCCCATGGTCGACGTCGACCTGCCGACGCTGCTCGGCCGCGAGCTGGCGCCGT
TCGCTGCGGCCGTCGAGGCCGGCGTCGCGTCGGTGATGACCTCGCACATCCTGGTCCCCGCCGTCGACCCGGCCCTGCCC
GCGACGCTGAGCCGTCCGGTGCTCGGGCTGCTGCGCGACCACCTCGGGTACGGCGGCGTCCTGGTCACCGACGCCCTCGA
CATGGCCGGCGCCTCGGCCGGTCGCGGGATCCCCGAGGCCGCAGTGCTGTCGCTCGCCGCCGGCGCCGACCTGCTGTGCC
TCGGTGCCGACAAGGACATCGCGCTGGTCCGGCAGGTCCAGGCGGCGATCGTCGCAGCGGTCCGCTCCGGGCGACTGGCC
GAGGAGCGCCTGGTCGAGGCGGTGGACCGGATCGCGCGGCTGCCGCGCGGGGCCGGCAGCGCCGCTCCCGTCGACGCCGC
CCGCCAGCTCGCCGGCGCCCGCCGTGCCGTGACGGTCGAGGGCGAGCTGCCAGACCTGCGCGGCGCCGAGGTCGTCAGCG
TCGCGACCCCCGCGAACATCGCGATCGGTGAGGTCCCGTGGGGCCTGCCGCCGGACCGCTTCCTCCAACCGGGCGAGCCC
GTCACCGGCGACCGGCCGGTCGTGCTCCAGGTGCGCGACGCGCACCGGCGGCCCGAGGTGCTGGTCGAGGGGGCCGCGGT
CGTGGTCGAGTGGGGCTGGCCGGGTCCGTACGCCGGGGGGACGCCCCGGATCTGCACGCGCGGCTACTCCCGTCCGGGAG
CCGTCGCGGTCACCGAGCTGTTGAGGAAGGCGGGGTGGGACCGGTGA

Upstream 100 bases:

>100_bases
TCATGGCCGGCTCCACGCTGATCGCGATCCCGGTCGTGATCTTCTTCCTCGTCGTCCAGGGCCGGATGGTCGCCGGCCTC
ACCTCGGGGGCGGTGAAGGG

Downstream 100 bases:

>100_bases
GCACCGGGCCGAGCAACGGGTTGAGCGTGGGCCTGGACATCGGCGCGACCAAGACCCTCGGTCTGGTCGTCGACGAGGAC
GGCGGCATCCGCGCGACCGT

Product: glycoside hydrolase family 3 protein

Products: N-acetylglucosamin; anhydro-N-acetylmuramic acid [C]

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MSDLTRSRPENGQSLEQLALRVLLPAFPGTTLARDVAGLFAEGLGGVCLFGSNTADGPAAVAELTSAIHAAAPYAVVAVD
EEGGDVTRLHALDRSPVLGPAALGAAGDLALTRETGAAIGTELAAAGIDLDLGPVADVNSDPDNPVIGTRSFGTDAAAAA
AHTAAWVAGLQGAGVAACAKHFPGHGDTAQDSHLALPMVDVDLPTLLGRELAPFAAAVEAGVASVMTSHILVPAVDPALP
ATLSRPVLGLLRDHLGYGGVLVTDALDMAGASAGRGIPEAAVLSLAAGADLLCLGADKDIALVRQVQAAIVAAVRSGRLA
EERLVEAVDRIARLPRGAGSAAPVDAARQLAGARRAVTVEGELPDLRGAEVVSVATPANIAIGEVPWGLPPDRFLQPGEP
VTGDRPVVLQVRDAHRRPEVLVEGAAVVVEWGWPGPYAGGTPRICTRGYSRPGAVAVTELLRKAGWDR

Sequences:

>Translated_468_residues
MSDLTRSRPENGQSLEQLALRVLLPAFPGTTLARDVAGLFAEGLGGVCLFGSNTADGPAAVAELTSAIHAAAPYAVVAVD
EEGGDVTRLHALDRSPVLGPAALGAAGDLALTRETGAAIGTELAAAGIDLDLGPVADVNSDPDNPVIGTRSFGTDAAAAA
AHTAAWVAGLQGAGVAACAKHFPGHGDTAQDSHLALPMVDVDLPTLLGRELAPFAAAVEAGVASVMTSHILVPAVDPALP
ATLSRPVLGLLRDHLGYGGVLVTDALDMAGASAGRGIPEAAVLSLAAGADLLCLGADKDIALVRQVQAAIVAAVRSGRLA
EERLVEAVDRIARLPRGAGSAAPVDAARQLAGARRAVTVEGELPDLRGAEVVSVATPANIAIGEVPWGLPPDRFLQPGEP
VTGDRPVVLQVRDAHRRPEVLVEGAAVVVEWGWPGPYAGGTPRICTRGYSRPGAVAVTELLRKAGWDR
>Mature_467_residues
SDLTRSRPENGQSLEQLALRVLLPAFPGTTLARDVAGLFAEGLGGVCLFGSNTADGPAAVAELTSAIHAAAPYAVVAVDE
EGGDVTRLHALDRSPVLGPAALGAAGDLALTRETGAAIGTELAAAGIDLDLGPVADVNSDPDNPVIGTRSFGTDAAAAAA
HTAAWVAGLQGAGVAACAKHFPGHGDTAQDSHLALPMVDVDLPTLLGRELAPFAAAVEAGVASVMTSHILVPAVDPALPA
TLSRPVLGLLRDHLGYGGVLVTDALDMAGASAGRGIPEAAVLSLAAGADLLCLGADKDIALVRQVQAAIVAAVRSGRLAE
ERLVEAVDRIARLPRGAGSAAPVDAARQLAGARRAVTVEGELPDLRGAEVVSVATPANIAIGEVPWGLPPDRFLQPGEPV
TGDRPVVLQVRDAHRRPEVLVEGAAVVVEWGWPGPYAGGTPRICTRGYSRPGAVAVTELLRKAGWDR

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=263, Percent_Identity=33.4600760456274, Blast_Score=112, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: NA

Molecular weight: Translated: 47403; Mature: 47272

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLTRSRPENGQSLEQLALRVLLPAFPGTTLARDVAGLFAEGLGGVCLFGSNTADGPAA
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHH
VAELTSAIHAAAPYAVVAVDEEGGDVTRLHALDRSPVLGPAALGAAGDLALTRETGAAIG
HHHHHHHHHHCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHCCCCCEEEECCCCHHHH
TELAAAGIDLDLGPVADVNSDPDNPVIGTRSFGTDAAAAAAHTAAWVAGLQGAGVAACAK
HHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
HFPGHGDTAQDSHLALPMVDVDLPTLLGRELAPFAAAVEAGVASVMTSHILVPAVDPALP
HCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCC
ATLSRPVLGLLRDHLGYGGVLVTDALDMAGASAGRGIPEAAVLSLAAGADLLCLGADKDI
HHHHHHHHHHHHHHCCCCCEEEHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEECCCCHH
ALVRQVQAAIVAAVRSGRLAEERLVEAVDRIARLPRGAGSAAPVDAARQLAGARRAVTVE
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCEEEEEE
GELPDLRGAEVVSVATPANIAIGEVPWGLPPDRFLQPGEPVTGDRPVVLQVRDAHRRPEV
CCCCCCCCCEEEEEECCCCEEECCCCCCCCHHHHCCCCCCCCCCCCEEEEECCCCCCCCE
LVEGAAVVVEWGWPGPYAGGTPRICTRGYSRPGAVAVTELLRKAGWDR
EEECCEEEEECCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SDLTRSRPENGQSLEQLALRVLLPAFPGTTLARDVAGLFAEGLGGVCLFGSNTADGPAA
CCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHH
VAELTSAIHAAAPYAVVAVDEEGGDVTRLHALDRSPVLGPAALGAAGDLALTRETGAAIG
HHHHHHHHHHCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHCCCCCEEEECCCCHHHH
TELAAAGIDLDLGPVADVNSDPDNPVIGTRSFGTDAAAAAAHTAAWVAGLQGAGVAACAK
HHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
HFPGHGDTAQDSHLALPMVDVDLPTLLGRELAPFAAAVEAGVASVMTSHILVPAVDPALP
HCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCC
ATLSRPVLGLLRDHLGYGGVLVTDALDMAGASAGRGIPEAAVLSLAAGADLLCLGADKDI
HHHHHHHHHHHHHHCCCCCEEEHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEECCCCHH
ALVRQVQAAIVAAVRSGRLAEERLVEAVDRIARLPRGAGSAAPVDAARQLAGARRAVTVE
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCEEEEEE
GELPDLRGAEVVSVATPANIAIGEVPWGLPPDRFLQPGEPVTGDRPVVLQVRDAHRRPEV
CCCCCCCCCEEEEEECCCCEEECCCCCCCCHHHHCCCCCCCCCCCCEEEEECCCCCCCCE
LVEGAAVVVEWGWPGPYAGGTPRICTRGYSRPGAVAVTELLRKAGWDR
EEECCEEEEECCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Cell Wall [C]

Specific reaction: Cell Wall = N-acetylglucosamin + anhydro-N-acetylmuramic acid [C]

General reaction: Hydrolyse [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]