| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119718654
Identifier: 119718654
GI number: 119718654
Start: 4688125
End: 4689570
Strand: Reverse
Name: 119718654
Synonym: Noca_4435
Alternate gene names: NA
Gene position: 4689570-4688125 (Counterclockwise)
Preceding gene: 119718656
Following gene: 119718650
Centisome position: 94.06
GC content: 77.66
Gene sequence:
>1446_bases GTGAGGGGCGCGCGCACGGTGGTCCTGGTGGGCGTGGGCCTGCTGGTCCTGCTCGCCGGCCCGGTGGCGCTCCTGCTCGC CGGGCTGACGCTGTACTTCCCGCGGGTGCGGGCGTGGCTGCGGCCGAGCCGCCGGGTGGTCGCGTGGTGGCTGGTGGCGG TCCTGGCCGTGGCCGGCCTGGCGGTCGTCGTGCCCGACGGGTGGCTGCCGATCGCGCCGGGTCCGGGCACGTGGGCGACG CCGTCGTACGTCGGGCGCCCCGTGGTCGGCGGCGCCGAGCACGGGCCTGCGGGGGAGTCGCCGCAGGTGCGCACCCGGTC CTACGGCCTCGACGACTGCCGCCGGCTCGAGGTGGACCCGCACGGCCGCCTGGTCGCGGTGTGCGGCGACGCCGGCAGTC CCGTGCTGCGGCTCGTCGACGCCGAGAGCCTGCGCCAGCGGGCGACCAAGGACCTCCCCGCCCGCGGCGCGGGCTGTCCG GCGGCCTTCGACCTCGACACGGACGGCCGGGTGGTCGTGGCAGCCGGGGACCGGCTGCTGGTGGTCGGCACCGCCGACGC CGACGACGAGCCGGACCTGACCACCGAGGCCACGATCGACCTGGGCATCGCCGCCGACGACTGTGTCGTCGGGGTCGCGG CCGCGGGCGAGCGCACCTGGTTCGTCTCGCGTGCGGGGGTGGCCGGCGTCGTCGCGGGGGACCGGGTCGCGACCGTCGAC CTCGACGACACCGTGGACCGGCCGCTCGCGGCCGTCGCCGCCGGCGCCTACGTCGCCGGCGCCCAGGCACTCCACCGGGT GGTGCTCACCGGCGGGCGTGTCACGGTCGCCTGGAGCTCGGCGTACGACGGCGGCGGCGAGCGCGGTGCCGCCCCCGTGC CGCTGCCGTCGGGCCTGGTGGCGGTCGCGGACAACCGCGAGCCGCGGCTCCAGGTGGTCTTCCACCGCGCCGACACCGGC GCGCCCGTGTGCCGGACCGAGGTCTTCGGCGACGACGCCGGGGCGACCGACGGCGGGCTGGTGGCCGCGGGCGACGCCGT GGTCGTGCAGAACTCCCACGGCTACGACGGGCCGCTCTCCACGGTCCTGGGGCGCACCACCGACCGCGGCATCGCGCGGG TCGCGGTCGTGGACGGCGAGTGCCGGGTCACCTGGTCGACGGAGCTGGACGTGCCGAGCGGCGCCCCGGCGGTGTCGGTG GCGGACGGGATCGTCTACGCCTACGTCAAGCGGCACAGCTGGCTCGGTGTGGACGCGTGGTACCTCACCGCCCTCGACCT GGACACCGGCCGGCTGCTGTGGGGGCGCCGCACCGGCCTCGGCGTGCTCCGTGACAACCACCACGGCGAGGTCACCCTCG GCCCGGGCCGGGCGGCGTACGTCCCGGTCCTCGGCGGCCTGGTCCGGGTCCGCGACCGTGAGGTGGACCCGCAGGATCAG GGGTAG
Upstream 100 bases:
>100_bases CACGTCCGAGAGTCGCTTCATGCGCCCACTGTGCTCCGTCGAGCCGCCCCGGCCAAGGGCTGCCCCGGACCTACGATCGT GGCGGGATGAGGCGGTCGAG
Downstream 100 bases:
>100_bases CGGATGCCGGTGGTCTGCTCGCTGAGCTCCCACAGCCGCCGCTGGGCGGCCTGGTCGTGGGACAGCTTGTTGCTGGTGGT CACGTGCGGGACGCCGCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 481; Mature: 481
Protein sequence:
>481_residues MRGARTVVLVGVGLLVLLAGPVALLLAGLTLYFPRVRAWLRPSRRVVAWWLVAVLAVAGLAVVVPDGWLPIAPGPGTWAT PSYVGRPVVGGAEHGPAGESPQVRTRSYGLDDCRRLEVDPHGRLVAVCGDAGSPVLRLVDAESLRQRATKDLPARGAGCP AAFDLDTDGRVVVAAGDRLLVVGTADADDEPDLTTEATIDLGIAADDCVVGVAAAGERTWFVSRAGVAGVVAGDRVATVD LDDTVDRPLAAVAAGAYVAGAQALHRVVLTGGRVTVAWSSAYDGGGERGAAPVPLPSGLVAVADNREPRLQVVFHRADTG APVCRTEVFGDDAGATDGGLVAAGDAVVVQNSHGYDGPLSTVLGRTTDRGIARVAVVDGECRVTWSTELDVPSGAPAVSV ADGIVYAYVKRHSWLGVDAWYLTALDLDTGRLLWGRRTGLGVLRDNHHGEVTLGPGRAAYVPVLGGLVRVRDREVDPQDQ G
Sequences:
>Translated_481_residues MRGARTVVLVGVGLLVLLAGPVALLLAGLTLYFPRVRAWLRPSRRVVAWWLVAVLAVAGLAVVVPDGWLPIAPGPGTWAT PSYVGRPVVGGAEHGPAGESPQVRTRSYGLDDCRRLEVDPHGRLVAVCGDAGSPVLRLVDAESLRQRATKDLPARGAGCP AAFDLDTDGRVVVAAGDRLLVVGTADADDEPDLTTEATIDLGIAADDCVVGVAAAGERTWFVSRAGVAGVVAGDRVATVD LDDTVDRPLAAVAAGAYVAGAQALHRVVLTGGRVTVAWSSAYDGGGERGAAPVPLPSGLVAVADNREPRLQVVFHRADTG APVCRTEVFGDDAGATDGGLVAAGDAVVVQNSHGYDGPLSTVLGRTTDRGIARVAVVDGECRVTWSTELDVPSGAPAVSV ADGIVYAYVKRHSWLGVDAWYLTALDLDTGRLLWGRRTGLGVLRDNHHGEVTLGPGRAAYVPVLGGLVRVRDREVDPQDQ G >Mature_481_residues MRGARTVVLVGVGLLVLLAGPVALLLAGLTLYFPRVRAWLRPSRRVVAWWLVAVLAVAGLAVVVPDGWLPIAPGPGTWAT PSYVGRPVVGGAEHGPAGESPQVRTRSYGLDDCRRLEVDPHGRLVAVCGDAGSPVLRLVDAESLRQRATKDLPARGAGCP AAFDLDTDGRVVVAAGDRLLVVGTADADDEPDLTTEATIDLGIAADDCVVGVAAAGERTWFVSRAGVAGVVAGDRVATVD LDDTVDRPLAAVAAGAYVAGAQALHRVVLTGGRVTVAWSSAYDGGGERGAAPVPLPSGLVAVADNREPRLQVVFHRADTG APVCRTEVFGDDAGATDGGLVAAGDAVVVQNSHGYDGPLSTVLGRTTDRGIARVAVVDGECRVTWSTELDVPSGAPAVSV ADGIVYAYVKRHSWLGVDAWYLTALDLDTGRLLWGRRTGLGVLRDNHHGEVTLGPGRAAYVPVLGGLVRVRDREVDPQDQ G
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49824; Mature: 49824
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.2 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRGARTVVLVGVGLLVLLAGPVALLLAGLTLYFPRVRAWLRPSRRVVAWWLVAVLAVAGL CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCE AVVVPDGWLPIAPGPGTWATPSYVGRPVVGGAEHGPAGESPQVRTRSYGLDDCRRLEVDP EEEECCCCEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHEEEECC HGRLVAVCGDAGSPVLRLVDAESLRQRATKDLPARGAGCPAAFDLDTDGRVVVAAGDRLL CCCEEEEECCCCCCEEEEECHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEEECCEEE VVGTADADDEPDLTTEATIDLGIAADDCVVGVAAAGERTWFVSRAGVAGVVAGDRVATVD EEECCCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCEEEEEECCCEEEEEECCEEEEEE LDDTVDRPLAAVAAGAYVAGAQALHRVVLTGGRVTVAWSSAYDGGGERGAAPVPLPSGLV CCCHHCCCHHHHHHHHHHHHHHHHHHHHEECCEEEEEEECCCCCCCCCCCCCCCCCCCEE AVADNREPRLQVVFHRADTGAPVCRTEVFGDDAGATDGGLVAAGDAVVVQNSHGYDGPLS EEECCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCCCCEEEECCEEEEECCCCCCCCHH TVLGRTTDRGIARVAVVDGECRVTWSTELDVPSGAPAVSVADGIVYAYVKRHSWLGVDAW HHHCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCEEHHCCEEEEEEHHCCCCCCCEE YLTALDLDTGRLLWGRRTGLGVLRDNHHGEVTLGPGRAAYVPVLGGLVRVRDREVDPQDQ EEEEEECCCCCEEEECCCCCEEEECCCCCEEEECCCCEEEHHHHCCEEEEECCCCCCCCC G C >Mature Secondary Structure MRGARTVVLVGVGLLVLLAGPVALLLAGLTLYFPRVRAWLRPSRRVVAWWLVAVLAVAGL CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCE AVVVPDGWLPIAPGPGTWATPSYVGRPVVGGAEHGPAGESPQVRTRSYGLDDCRRLEVDP EEEECCCCEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHEEEECC HGRLVAVCGDAGSPVLRLVDAESLRQRATKDLPARGAGCPAAFDLDTDGRVVVAAGDRLL CCCEEEEECCCCCCEEEEECHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEEECCEEE VVGTADADDEPDLTTEATIDLGIAADDCVVGVAAAGERTWFVSRAGVAGVVAGDRVATVD EEECCCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCEEEEEECCCEEEEEECCEEEEEE LDDTVDRPLAAVAAGAYVAGAQALHRVVLTGGRVTVAWSSAYDGGGERGAAPVPLPSGLV CCCHHCCCHHHHHHHHHHHHHHHHHHHHEECCEEEEEEECCCCCCCCCCCCCCCCCCCEE AVADNREPRLQVVFHRADTGAPVCRTEVFGDDAGATDGGLVAAGDAVVVQNSHGYDGPLS EEECCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCCCCEEEECCEEEEECCCCCCCCHH TVLGRTTDRGIARVAVVDGECRVTWSTELDVPSGAPAVSVADGIVYAYVKRHSWLGVDAW HHHCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCEEHHCCEEEEEEHHCCCCCCCEE YLTALDLDTGRLLWGRRTGLGVLRDNHHGEVTLGPGRAAYVPVLGGLVRVRDREVDPQDQ EEEEEECCCCCEEEECCCCCEEEECCCCCEEEECCCCEEEHHHHCCEEEEECCCCCCCCC G C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA