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The map label for this gene is SC7.0 [H]

Identifier: 119718488

GI number: 119718488

Start: 4508671

End: 4508874

Strand: Reverse

Name: SC7.0 [H]

Synonym: Noca_4269

Alternate gene names: 119718488

Gene position: 4508874-4508671 (Counterclockwise)

Preceding gene: 119718489

Following gene: 119718487

Centisome position: 90.43

GC content: 62.75

Gene sequence:

>204_bases
ATGGCTCAGGGCACTGTTAAGTGGTTCAACGCGGAGAAGGGCTTCGGCTTCATCGCGCAGGAGGACGGCGGCGACGACGT
CTTCGTGCACTACTCGGCGATCCAGACCCAGGGTTACAAGTCCCTGGACGAGAACCAGAAGGTCGAGTTCGACGTCACCC
AGGGCCCGAAGGGCCCGCAGGCGGAGAACGTTCGCCCGATCTGA

Upstream 100 bases:

>100_bases
GTGGGCCTGCCACTCACGTAAGTCGGAGCGACGGTGTCACCGCATCTGGTGCGGACCGTCGAAGTGACGGTTCTCGCCCC
GACTAAGGAGTATCGAGCAC

Downstream 100 bases:

>100_bases
TTCACGCAGGAGATCTCGGACCCCGGGTCCGAGCAGTCTTCGAGGAGGCCCCACCCGCACGGGTGGGGCCTCCTCACCAT
CTCGGCCACCGTCTGGGGGG

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MAQGTVKWFNAEKGFGFIAQEDGGDDVFVHYSAIQTQGYKSLDENQKVEFDVTQGPKGPQAENVRPI

Sequences:

>Translated_67_residues
MAQGTVKWFNAEKGFGFIAQEDGGDDVFVHYSAIQTQGYKSLDENQKVEFDVTQGPKGPQAENVRPI
>Mature_66_residues
AQGTVKWFNAEKGFGFIAQEDGGDDVFVHYSAIQTQGYKSLDENQKVEFDVTQGPKGPQAENVRPI

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI156415990, Length=65, Percent_Identity=47.6923076923077, Blast_Score=62, Evalue=9e-11,
Organism=Homo sapiens, GI224586882, Length=65, Percent_Identity=47.6923076923077, Blast_Score=62, Evalue=1e-10,
Organism=Escherichia coli, GI1786841, Length=62, Percent_Identity=66.1290322580645, Blast_Score=91, Evalue=1e-20,
Organism=Escherichia coli, GI1789979, Length=64, Percent_Identity=65.625, Blast_Score=91, Evalue=2e-20,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=58.2089552238806, Blast_Score=88, Evalue=1e-19,
Organism=Escherichia coli, GI2367114, Length=61, Percent_Identity=62.2950819672131, Blast_Score=88, Evalue=1e-19,
Organism=Escherichia coli, GI1787834, Length=61, Percent_Identity=63.9344262295082, Blast_Score=86, Evalue=5e-19,
Organism=Escherichia coli, GI1787839, Length=61, Percent_Identity=62.2950819672131, Blast_Score=82, Evalue=6e-18,
Organism=Escherichia coli, GI1788126, Length=65, Percent_Identity=60, Blast_Score=81, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17533635, Length=66, Percent_Identity=43.9393939393939, Blast_Score=62, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=47.5409836065574, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7420; Mature: 7289

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQGTVKWFNAEKGFGFIAQEDGGDDVFVHYSAIQTQGYKSLDENQKVEFDVTQGPKGPQ
CCCCCEEEEECCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCC
AENVRPI
CCCCCCC
>Mature Secondary Structure 
AQGTVKWFNAEKGFGFIAQEDGGDDVFVHYSAIQTQGYKSLDENQKVEFDVTQGPKGPQ
CCCCEEEEECCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCC
AENVRPI
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1437568 [H]