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The map label for this gene is 119718420

Identifier: 119718420

GI number: 119718420

Start: 4440010

End: 4440396

Strand: Reverse

Name: 119718420

Synonym: Noca_4201

Alternate gene names: NA

Gene position: 4440396-4440010 (Counterclockwise)

Preceding gene: 119718422

Following gene: 119718419

Centisome position: 89.06

GC content: 68.48

Gene sequence:

>387_bases
ATGGCACGCAGCAAGGTCGGTCGCACCGTCGAGGGGCTCGGTGAGTACCTCAAGGAGCAGCGCGTCGCCGCCGAGCTGTC
CGTGCGTCAGCTCGCCGCTCAGGCCGGGGTATCCAACCCGTACCTGAGCCAGATCGAGCGAGGTCTGCGACGCCCCTCGG
CCGAGGTGCTCCAGCAGATCGCCAAGGCGCTGCGCATCTCCGCCGAACAGCTCTACATCCGCGCCGGCATCGTCGACCCG
CACGCGGGGTCGCCCGGCTCGGTCGAGCTGGCGATCCTCGGTGACAGCAAGCTCACCGAACGGCAGAAGCAGTCCCTGCT
CGACGTCTACTCGTCGTTCCTCGCCCTGAACAAGGCGAGCGACGACACCGACGGACCGGCGAGCTGA

Upstream 100 bases:

>100_bases
CGCAACGTCGTACGAGATTCATCAACATCCACAGAGAAATGTGGACTGGATCACCGCGTCCTGACTTGAAAGTGCTAGCA
ACAGCAAGCACCATGGAGAC

Downstream 100 bases:

>100_bases
ACCCAGGGCCCGGTGCCGTGCCGGGTCCACACCCAACCGAAGGAGCAAAGGACATGGCCAAGGCCAAGTTCGACATCAAG
ACCGAGGCGACCCGCCCGCT

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MARSKVGRTVEGLGEYLKEQRVAAELSVRQLAAQAGVSNPYLSQIERGLRRPSAEVLQQIAKALRISAEQLYIRAGIVDP
HAGSPGSVELAILGDSKLTERQKQSLLDVYSSFLALNKASDDTDGPAS

Sequences:

>Translated_128_residues
MARSKVGRTVEGLGEYLKEQRVAAELSVRQLAAQAGVSNPYLSQIERGLRRPSAEVLQQIAKALRISAEQLYIRAGIVDP
HAGSPGSVELAILGDSKLTERQKQSLLDVYSSFLALNKASDDTDGPAS
>Mature_127_residues
ARSKVGRTVEGLGEYLKEQRVAAELSVRQLAAQAGVSNPYLSQIERGLRRPSAEVLQQIAKALRISAEQLYIRAGIVDPH
AGSPGSVELAILGDSKLTERQKQSLLDVYSSFLALNKASDDTDGPAS

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 13749; Mature: 13618

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARSKVGRTVEGLGEYLKEQRVAAELSVRQLAAQAGVSNPYLSQIERGLRRPSAEVLQQI
CCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHH
AKALRISAEQLYIRAGIVDPHAGSPGSVELAILGDSKLTERQKQSLLDVYSSFLALNKAS
HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC
DDTDGPAS
CCCCCCCC
>Mature Secondary Structure 
ARSKVGRTVEGLGEYLKEQRVAAELSVRQLAAQAGVSNPYLSQIERGLRRPSAEVLQQI
CCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHH
AKALRISAEQLYIRAGIVDPHAGSPGSVELAILGDSKLTERQKQSLLDVYSSFLALNKAS
HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC
DDTDGPAS
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]