| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119718385
Identifier: 119718385
GI number: 119718385
Start: 4398409
End: 4399623
Strand: Reverse
Name: 119718385
Synonym: Noca_4166
Alternate gene names: NA
Gene position: 4399623-4398409 (Counterclockwise)
Preceding gene: 119718386
Following gene: 119718384
Centisome position: 88.24
GC content: 78.44
Gene sequence:
>1215_bases GTGAGCGACGTCCTCGACACCCGCGTGTACGGCGACCCCGCGGCCTGCTCGGCCGCGGCCGGCGCCGTCGGCGGGGTGCG GAGGGCGGTGGCGGACGCCGAGTCCGCGGCCGGCAAGGCCCGCTCGCTGGCGAGCTCGTGGCGCGGCCAGGCGGGCGCCG CGTTCGAGGCCCGGGTCGACGCGACCATCACGGACCTGGCCGGGCTCGGCGAGCGGCTCGAGGCGATGCGGTCCGCGCTG GGCGACTTCGCCGGCGAGCTCACCGTCGTTCGGGACCGGATGGCCCACGCCCGGGCCGTGGCCGCCGCGGGCGGCGTGAG CGTCACCGGCACCGACGTACACCGCCCGGTCGCGCCGGAGGTCATGAGCCAGGGCCAGGCCGACGCGTTCACCACCCGGG CCGAGGCCTGGAACGAGGCGGTCGGCATCGCCGAGGCGGCGCGCACCAAGGAGACCGAGGCGCACGACCACCTGCGCGAC GGCCTGGACCGGACGACCGGCGACGGCTTCCTCGAGGACCTGCTCGAGCGGCTCGGCCTGCTGCCCGCCGACTTCGCCGA CGGCGACGACATCGGGGCCTACCTGCTCGGCCTGGGCGGCCTCGGGTTCGGCGCGGCGACCGGCTACCTGGTCTCCAGCC GCTACGGGATCTTCCAGCCGCGGGTCGCGGGCCGGTTCGCGAGCCCCGCCGGGCTCGACTTCTGGGGCCGGCTGCGGGCC GGCGCGTCCGGCGACAGCTTCCACGCCCGCCCCTACACCGCGGGCGCGCGGGACTGGTGGGGCCGGGCCGGCAAGGTCGG CGGGTACGCCGGCACCGCGCTCACCGGCGGCTTCGCGGCCTGGAACCAGTGGCAGGCCGACGCCGACGACCCGTCGCTGA GCGACGCGAACAAGGCCGGCCGCGCCGGCGCGATGGGTGTGTCCACCGCCGCGGGCGCCTGGGCGGGCGCCGAGGCCGGC GCCTGGGCCGGCGGCGCGATCGGCACCGCGATCTGCCCCGGCATCGGCACCGCCATCGGCGGCGTCGCCGGCGGCCTGGT CGGTGGCGCGGTCGGCGGGTTCGTCGGCAGCGAGGTCGGCCAGGAGGTGATGGGCGCGGTCGGCGACGCCACCGAGGCCA CCGTCGACTGGGTCGGCGACGCCGCGGGCGACGTGGGCGACTGGGCCGGCGACACCGGCGGCGACGTCGTCGACGCCGTC ACGTTCTGGGACTGA
Upstream 100 bases:
>100_bases CCAGGACCGGTGCGGCGAGCGGCCTGCTCACCGGCACCGACGACCTGATCGGCGCCCGGCTCGACTCCCACCTCGACGGC GGCACGGGGCCGGTCGGGCC
Downstream 100 bases:
>100_bases GGAGGAGTGCACGTGGTGACGCCGGTGCTGATGCTGCTCGCCGGGGTGGGCCTGGCCGCCTGGAACCTCTGGCAGCGGCG CGGCCGCACCCCGGCCGCCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 404; Mature: 403
Protein sequence:
>404_residues MSDVLDTRVYGDPAACSAAAGAVGGVRRAVADAESAAGKARSLASSWRGQAGAAFEARVDATITDLAGLGERLEAMRSAL GDFAGELTVVRDRMAHARAVAAAGGVSVTGTDVHRPVAPEVMSQGQADAFTTRAEAWNEAVGIAEAARTKETEAHDHLRD GLDRTTGDGFLEDLLERLGLLPADFADGDDIGAYLLGLGGLGFGAATGYLVSSRYGIFQPRVAGRFASPAGLDFWGRLRA GASGDSFHARPYTAGARDWWGRAGKVGGYAGTALTGGFAAWNQWQADADDPSLSDANKAGRAGAMGVSTAAGAWAGAEAG AWAGGAIGTAICPGIGTAIGGVAGGLVGGAVGGFVGSEVGQEVMGAVGDATEATVDWVGDAAGDVGDWAGDTGGDVVDAV TFWD
Sequences:
>Translated_404_residues MSDVLDTRVYGDPAACSAAAGAVGGVRRAVADAESAAGKARSLASSWRGQAGAAFEARVDATITDLAGLGERLEAMRSAL GDFAGELTVVRDRMAHARAVAAAGGVSVTGTDVHRPVAPEVMSQGQADAFTTRAEAWNEAVGIAEAARTKETEAHDHLRD GLDRTTGDGFLEDLLERLGLLPADFADGDDIGAYLLGLGGLGFGAATGYLVSSRYGIFQPRVAGRFASPAGLDFWGRLRA GASGDSFHARPYTAGARDWWGRAGKVGGYAGTALTGGFAAWNQWQADADDPSLSDANKAGRAGAMGVSTAAGAWAGAEAG AWAGGAIGTAICPGIGTAIGGVAGGLVGGAVGGFVGSEVGQEVMGAVGDATEATVDWVGDAAGDVGDWAGDTGGDVVDAV TFWD >Mature_403_residues SDVLDTRVYGDPAACSAAAGAVGGVRRAVADAESAAGKARSLASSWRGQAGAAFEARVDATITDLAGLGERLEAMRSALG DFAGELTVVRDRMAHARAVAAAGGVSVTGTDVHRPVAPEVMSQGQADAFTTRAEAWNEAVGIAEAARTKETEAHDHLRDG LDRTTGDGFLEDLLERLGLLPADFADGDDIGAYLLGLGGLGFGAATGYLVSSRYGIFQPRVAGRFASPAGLDFWGRLRAG ASGDSFHARPYTAGARDWWGRAGKVGGYAGTALTGGFAAWNQWQADADDPSLSDANKAGRAGAMGVSTAAGAWAGAEAGA WAGGAIGTAICPGIGTAIGGVAGGLVGGAVGGFVGSEVGQEVMGAVGDATEATVDWVGDAAGDVGDWAGDTGGDVVDAVT FWD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40413; Mature: 40281
Theoretical pI: Translated: 4.29; Mature: 4.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDVLDTRVYGDPAACSAAAGAVGGVRRAVADAESAAGKARSLASSWRGQAGAAFEARVD CCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHCC ATITDLAGLGERLEAMRSALGDFAGELTVVRDRMAHARAVAAAGGVSVTGTDVHRPVAPE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHH VMSQGQADAFTTRAEAWNEAVGIAEAARTKETEAHDHLRDGLDRTTGDGFLEDLLERLGL HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC LPADFADGDDIGAYLLGLGGLGFGAATGYLVSSRYGIFQPRVAGRFASPAGLDFWGRLRA CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCHHHHHHC GASGDSFHARPYTAGARDWWGRAGKVGGYAGTALTGGFAAWNQWQADADDPSLSDANKAG CCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCHHHHCCCCCCCCCCCCCCHHHCC RAGAMGVSTAAGAWAGAEAGAWAGGAIGTAICPGIGTAIGGVAGGLVGGAVGGFVGSEVG CCCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QEVMGAVGDATEATVDWVGDAAGDVGDWAGDTGGDVVDAVTFWD HHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCC >Mature Secondary Structure SDVLDTRVYGDPAACSAAAGAVGGVRRAVADAESAAGKARSLASSWRGQAGAAFEARVD CCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHCC ATITDLAGLGERLEAMRSALGDFAGELTVVRDRMAHARAVAAAGGVSVTGTDVHRPVAPE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHH VMSQGQADAFTTRAEAWNEAVGIAEAARTKETEAHDHLRDGLDRTTGDGFLEDLLERLGL HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC LPADFADGDDIGAYLLGLGGLGFGAATGYLVSSRYGIFQPRVAGRFASPAGLDFWGRLRA CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCHHHHHHC GASGDSFHARPYTAGARDWWGRAGKVGGYAGTALTGGFAAWNQWQADADDPSLSDANKAG CCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCHHHHCCCCCCCCCCCCCCHHHCC RAGAMGVSTAAGAWAGAEAGAWAGGAIGTAICPGIGTAIGGVAGGLVGGAVGGFVGSEVG CCCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QEVMGAVGDATEATVDWVGDAAGDVGDWAGDTGGDVVDAVTFWD HHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA