| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is ifcA [H]
Identifier: 119718296
GI number: 119718296
Start: 4304586
End: 4306061
Strand: Reverse
Name: ifcA [H]
Synonym: Noca_4077
Alternate gene names: 119718296
Gene position: 4306061-4304586 (Counterclockwise)
Preceding gene: 119718297
Following gene: 119718295
Centisome position: 86.37
GC content: 72.43
Gene sequence:
>1476_bases GTGACCGAGACCCCGATGATCGAGGTCGCCGTCGTCGGTGCGGGCGCGGCGGGCCTGTCGGTCGCCGTCCACGCCGCCGC ACAGGGTGCCCGCGTGCGCCTCATCGAGAAGCAGGACACCCTCGGTGGCATGCTGCACATCGCCAGCGGCGAGTTCTCGG GAGCCGGCAGTCGCCGACAGGCGGCCCGCGGCATCGAGGACTCGCCCCAGCGCCATTTCGAGGAGGTGCGCAGGCTCTCC CACGACCGTGTCGACGCCGACCTCGCGTGGCTGTCGGTCCGCCACCAGGGTGAGACCGTCGACTGGCTCGACGACCACGG GTTCGCCTTCCACGAGGACTGCCCGGGCCTGATCCACGGTCACGAGGTCTACGAGGTGCCCCGCACCTACTGGGGGCAGG ACCACGGCCGGTCCGTCCTCGAGGTGCTCGAGCGCGAGCTGACCGCCCACGTCCGGGCCGGCCGAGCCCAGGTGCACACG GCGACGACCGTGCGGTCCCTCGCGATCGAGGACGGCCGGGTGGTCGGGGTCGAGGTGTCGTCCGGCGAGGGCGATCACAC CATCCGCGCCGATGCCGTCGTCCTCGCGACCGGCGGGTACGACGCGAACGTCGAGCTGCGCAACCGCTTCCTGCCCGAGC ATTGCTGCGCGGTGCTCGTCGGCTGTCTCGACCACGCCACGGGGGACGGCCTCCTGATGGCCGAGGATGCCGGTGCCGCC GTCTCCTCGGACGGCGTGTTCCTGCCCGTGATGGGCATGATCCCCGACCCCGCGCGTCCCGGGCACGCCGTCGACTACCG CGAGGCGTACATCGAGATGGCCCCGGCGTACCGGGAGCCCCTGGAGATCTGGGTGAACCTCGACGGCCGCCGCTTCGTGC CGGAGGACACCCGCAGCCCCGAGCTGCGCGAGCGCGCCCTGATGGCCCAGCCGTCGAGCACGATGCACATCATCTTCGAC GCCGGTGCCCTCGCGGCCGCGCCGACCGGCCTGATCCGGAATCCGGCCGGGCCGTGGGAGCCGGAGCGGTTCGCGGAGGT CTGCCGGACCAGCCCCTGGGTGACGCGAGCGGACTCGCTGGAAGCGCTGGCGCGGGCCCTCGGCATCGATCCCGGGGCGC TGGTCGCGACGGTGGGCGACTACCACACCGCGATCGAGACCGGGCACGACCCGATCGGTCGCGCGAACCTGCCCCGCCGG CTCGACCAGCCGCCGTTCTACGCCATCACCACGGTCGCTGCCTCGATCCTGTCCCGCGACGGGCTGGCCGTCGACACCGA CCTGCGGGTGCTGGACCGGATGGGATCCCCGATCGCCGGCCTCTATGCCGTCGGGGAGGTGCTCGGCAACAACAAGTTCG CGGGCGACAACTACGTCGGCGGCATGAGCATCACGCCGGCGCTCACGCTCGGGCGGCTGCTCGGCGAACGCGTGGGGGCC GGATCCGGACAACAACCCAAGGAGCACCTCGGATGA
Upstream 100 bases:
>100_bases CGGCGGAGTCGTACGCCGCCCTGCTGTCCGCGGGGGCCGAACCCCTCGCCGACCTCGTCGTGCGCGGTCCGGAAGGCGTC GTGATCGAGGTGGTCAGCGC
Downstream 100 bases:
>100_bases GTGACCCGTACCTGGTCGGCGGCGTCAACGCGGCGTTCGTGGGTGTCAACGACCGCAAGCCGCACCTGGACCTGTACCAG GGGCAGCTCGGGTGGGAGAT
Product: fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein
Products: NA
Alternate protein names: Fe(3+)-induced flavocytochrome C3; Ifc3; Iron(III)-induced flavocytochrome C3 [H]
Number of amino acids: Translated: 491; Mature: 490
Protein sequence:
>491_residues MTETPMIEVAVVGAGAAGLSVAVHAAAQGARVRLIEKQDTLGGMLHIASGEFSGAGSRRQAARGIEDSPQRHFEEVRRLS HDRVDADLAWLSVRHQGETVDWLDDHGFAFHEDCPGLIHGHEVYEVPRTYWGQDHGRSVLEVLERELTAHVRAGRAQVHT ATTVRSLAIEDGRVVGVEVSSGEGDHTIRADAVVLATGGYDANVELRNRFLPEHCCAVLVGCLDHATGDGLLMAEDAGAA VSSDGVFLPVMGMIPDPARPGHAVDYREAYIEMAPAYREPLEIWVNLDGRRFVPEDTRSPELRERALMAQPSSTMHIIFD AGALAAAPTGLIRNPAGPWEPERFAEVCRTSPWVTRADSLEALARALGIDPGALVATVGDYHTAIETGHDPIGRANLPRR LDQPPFYAITTVAASILSRDGLAVDTDLRVLDRMGSPIAGLYAVGEVLGNNKFAGDNYVGGMSITPALTLGRLLGERVGA GSGQQPKEHLG
Sequences:
>Translated_491_residues MTETPMIEVAVVGAGAAGLSVAVHAAAQGARVRLIEKQDTLGGMLHIASGEFSGAGSRRQAARGIEDSPQRHFEEVRRLS HDRVDADLAWLSVRHQGETVDWLDDHGFAFHEDCPGLIHGHEVYEVPRTYWGQDHGRSVLEVLERELTAHVRAGRAQVHT ATTVRSLAIEDGRVVGVEVSSGEGDHTIRADAVVLATGGYDANVELRNRFLPEHCCAVLVGCLDHATGDGLLMAEDAGAA VSSDGVFLPVMGMIPDPARPGHAVDYREAYIEMAPAYREPLEIWVNLDGRRFVPEDTRSPELRERALMAQPSSTMHIIFD AGALAAAPTGLIRNPAGPWEPERFAEVCRTSPWVTRADSLEALARALGIDPGALVATVGDYHTAIETGHDPIGRANLPRR LDQPPFYAITTVAASILSRDGLAVDTDLRVLDRMGSPIAGLYAVGEVLGNNKFAGDNYVGGMSITPALTLGRLLGERVGA GSGQQPKEHLG >Mature_490_residues TETPMIEVAVVGAGAAGLSVAVHAAAQGARVRLIEKQDTLGGMLHIASGEFSGAGSRRQAARGIEDSPQRHFEEVRRLSH DRVDADLAWLSVRHQGETVDWLDDHGFAFHEDCPGLIHGHEVYEVPRTYWGQDHGRSVLEVLERELTAHVRAGRAQVHTA TTVRSLAIEDGRVVGVEVSSGEGDHTIRADAVVLATGGYDANVELRNRFLPEHCCAVLVGCLDHATGDGLLMAEDAGAAV SSDGVFLPVMGMIPDPARPGHAVDYREAYIEMAPAYREPLEIWVNLDGRRFVPEDTRSPELRERALMAQPSSTMHIIFDA GALAAAPTGLIRNPAGPWEPERFAEVCRTSPWVTRADSLEALARALGIDPGALVATVGDYHTAIETGHDPIGRANLPRRL DQPPFYAITTVAASILSRDGLAVDTDLRVLDRMGSPIAGLYAVGEVLGNNKFAGDNYVGGMSITPALTLGRLLGERVGAG SGQQPKEHLG
Specific function: Catalyzes unidirectional fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown [H]
COG id: COG1053
COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 cytochrome c domain [H]
Homologues:
Organism=Caenorhabditis elegans, GI71986328, Length=472, Percent_Identity=28.6016949152542, Blast_Score=128, Evalue=8e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003953 - InterPro: IPR013027 - InterPro: IPR010960 - InterPro: IPR011031 [H]
Pfam domain/function: PF00890 FAD_binding_2 [H]
EC number: =1.3.99.1 [H]
Molecular weight: Translated: 52604; Mature: 52473
Theoretical pI: Translated: 5.13; Mature: 5.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTETPMIEVAVVGAGAAGLSVAVHAAAQGARVRLIEKQDTLGGMLHIASGEFSGAGSRRQ CCCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCCEEEEECCCCCCCCCHHH AARGIEDSPQRHFEEVRRLSHDRVDADLAWLSVRHQGETVDWLDDHGFAFHEDCPGLIHG HHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEECEECCCCCEECCCCCCCCCC HEVYEVPRTYWGQDHGRSVLEVLERELTAHVRAGRAQVHTATTVRSLAIEDGRVVGVEVS CHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHEECCCEEEEEEEC SGEGDHTIRADAVVLATGGYDANVELRNRFLPEHCCAVLVGCLDHATGDGLLMAEDAGAA CCCCCCEEEECEEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCE VSSDGVFLPVMGMIPDPARPGHAVDYREAYIEMAPAYREPLEIWVNLDGRRFVPEDTRSP ECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCEECCCCCCCH ELRERALMAQPSSTMHIIFDAGALAAAPTGLIRNPAGPWEPERFAEVCRTSPWVTRADSL HHHHHHHHCCCCCCEEEEEECCCHHHCCCCHHCCCCCCCCHHHHHHHHCCCCCCCCHHHH EALARALGIDPGALVATVGDYHTAIETGHDPIGRANLPRRLDQPPFYAITTVAASILSRD HHHHHHHCCCCCCEEEECCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC GLAVDTDLRVLDRMGSPIAGLYAVGEVLGNNKFAGDNYVGGMSITPALTLGRLLGERVGA CCEECHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC GSGQQPKEHLG CCCCCCHHHCC >Mature Secondary Structure TETPMIEVAVVGAGAAGLSVAVHAAAQGARVRLIEKQDTLGGMLHIASGEFSGAGSRRQ CCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCCEEEEECCCCCCCCCHHH AARGIEDSPQRHFEEVRRLSHDRVDADLAWLSVRHQGETVDWLDDHGFAFHEDCPGLIHG HHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEECEECCCCCEECCCCCCCCCC HEVYEVPRTYWGQDHGRSVLEVLERELTAHVRAGRAQVHTATTVRSLAIEDGRVVGVEVS CHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHEECCCEEEEEEEC SGEGDHTIRADAVVLATGGYDANVELRNRFLPEHCCAVLVGCLDHATGDGLLMAEDAGAA CCCCCCEEEECEEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCE VSSDGVFLPVMGMIPDPARPGHAVDYREAYIEMAPAYREPLEIWVNLDGRRFVPEDTRSP ECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCEECCCCCCCH ELRERALMAQPSSTMHIIFDAGALAAAPTGLIRNPAGPWEPERFAEVCRTSPWVTRADSL HHHHHHHHCCCCCCEEEEEECCCHHHCCCCHHCCCCCCCCHHHHHHHHCCCCCCCCHHHH EALARALGIDPGALVATVGDYHTAIETGHDPIGRANLPRRLDQPPFYAITTVAASILSRD HHHHHHHCCCCCCEEEECCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC GLAVDTDLRVLDRMGSPIAGLYAVGEVLGNNKFAGDNYVGGMSITPALTLGRLLGERVGA CCEECHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC GSGQQPKEHLG CCCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10455032; 10581549 [H]